{% set version = "1.44.0" %}
{% set name = "genoset" %}
{% set bioc = "3.11" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
  md5: 6d926edd0c07834236eb5c84bac82440
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: testthat, knitr, BiocStyle, rmarkdown, DNAcopy, stats, BSgenome, Biostrings
requirements:
  host:
    - 'bioconductor-biocgenerics >=0.34.0,<0.35.0'
    - 'bioconductor-genomeinfodb >=1.24.0,<1.25.0'
    - 'bioconductor-genomicranges >=1.40.0,<1.41.0'
    - 'bioconductor-iranges >=2.22.0,<2.23.0'
    - 'bioconductor-s4vectors >=0.26.0,<0.27.0'
    - 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
    - r-base
    - libblas
    - liblapack
  run:
    - 'bioconductor-biocgenerics >=0.34.0,<0.35.0'
    - 'bioconductor-genomeinfodb >=1.24.0,<1.25.0'
    - 'bioconductor-genomicranges >=1.40.0,<1.41.0'
    - 'bioconductor-iranges >=2.22.0,<2.23.0'
    - 'bioconductor-s4vectors >=0.26.0,<0.27.0'
    - 'bioconductor-summarizedexperiment >=1.18.0,<1.19.0'
    - r-base
  build:
    - {{ compiler('c') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: Artistic-2.0
  summary: 'A RangedSummarizedExperiment with methods for copy number analysis'
  description: 'GenoSet provides an extension of the RangedSummarizedExperiment class with additional API features. This class provides convenient and fast methods for working with segmented genomic data. Additionally, GenoSet provides the class RleDataFrame which stores runs of data along the genome for multiple samples and provides very fast summaries of arbitrary row sets (regions of the genome).'
extra:
  identifiers:
    - biotools:genoset
    - doi:10.1038/nmeth.3252
  parent_recipe:
    name: bioconductor-genoset
    path: recipes/bioconductor-genoset
    version: 1.36.0

