[,GenoSet,ANY,ANY,ANY-method
                        Subset a GenoSet
baf2mbaf                Calculate mBAF from BAF
boundingIndices         Find indices of features bounding a set of
                        chromosome ranges/genes
boundingIndicesByChr    Find indices of features bounding a set of
                        chromosome ranges/genes, across chromosomes
bounds2Rle              Convert bounding indices into a Rle
calcGC                  Calculate GC Percentage in windows
calcGC2                 Calculate GC Percentage in sliding window
chr                     Chromosome name for each feature
chrIndices              Get a matrix of first and last index of
                        features in each chromosome
chrInfo                 Get chromosome start and stop positions
chrNames                Get list of unique chromosome names
chrOrder                Order chromosome names in proper genome order
chrPartitioning         Partitioning by Chromosome
cn2lr                   Take vector or matrix of copynumber values,
                        convert to log2ratios
fixSegNAs               Fix NA runs in a Rle
gcCorrect               Correct copy number for GC content
genome                  Get and set the genome universe annotation.
genomeAxis              Label axis with base pair units
genoPlot                Plot data along the genome
genoPos                 Get base positions of features in genome-scale
                        units
GenoSet                 Create a GenoSet object
GenoSet-class           Class '"GenoSet"'
genoset-datasets        Example GenoSet object
genoset-package         GenoSet: An eSet for data with genome locations
isGenomeOrder           Check if a GRanges orGenoSet is in genome order
lr2cn                   Take vector or matrix of log2 ratios, convert
                        to copynumber
modeCenter              Center continuous data on mode
nrow,GenomicRanges-method
                        GenomicRanges API Additions
numCallable             Count Rle positions >= min
pos,GenoSetOrGenomicRanges-method
                        Chromosome position of features
rangeSampleMeans        Average features in ranges per sample
rangeSegMeanLength      Get segment widths
rbindDataframe          A fast method for concatenating data.frames
readGenoSet             Load a GenoSet from a RData file
RleDataFrame-class      Class '"RleDataFrame"'
RleDataFrame-views      Calculate summary statistics on views of an
                        RleDataFrame
runCBS                  Run CBS Segmentation
segPairTable            Convert Rle objects to tables of segments
segs2Granges            GRanges from segment table
segs2Rle                Make Rle from segments for one sample
segs2RleDataFrame       CBS segments to probe matrix
segTable                Convert Rle objects to tables of segments
toGenomeOrder           Set a GRanges or GenoSet to genome order
