as.list,TxDb-method	TxDb-class
asBED,TxDb-method	as-format-methods
asGFF,TxDb-method	as-format-methods
cds	transcripts
cds,TxDb-method	transcripts
cdsBy	transcriptsBy
cdsBy,TxDb-method	transcriptsBy
cdsByOverlaps	transcriptsByOverlaps
cdsByOverlaps,TxDb-method	transcriptsByOverlaps
class:FeatureDb	FeatureDb-class
class:TxDb	TxDb-class
columns,TxDb-method	select-methods
coordinate-mapping	coordinate-mapping-methods
coverageByTranscript	coverageByTranscript
DEFAULT_CIRC_SEQS	DEFAULT_CIRC_SEQS
disjointExons	disjointExons
disjointExons,TxDb-method	disjointExons
distance,GenomicRanges,TxDb-method	nearest-methods
exons	transcripts
exons,TxDb-method	transcripts
exonsBy	transcriptsBy
exonsBy,TxDb-method	transcriptsBy
exonsByOverlaps	transcriptsByOverlaps
exonsByOverlaps,TxDb-method	transcriptsByOverlaps
extractTranscriptSeqs	extractTranscriptSeqs
extractTranscriptSeqs,ANY-method	extractTranscriptSeqs
extractTranscriptSeqs,DNAString-method	extractTranscriptSeqs
extractUpstreamSeqs	extractUpstreamSeqs
extractUpstreamSeqs,GenomicRanges-method	extractUpstreamSeqs
extractUpstreamSeqs,GRangesList-method	extractUpstreamSeqs
extractUpstreamSeqs,TxDb-method	extractUpstreamSeqs
FeatureDb	FeatureDb-class
FeatureDb-class	FeatureDb-class
features	features
features,FeatureDb-method	features
fiveUTRsByTranscript	transcriptsBy
fiveUTRsByTranscript,TxDb-method	transcriptsBy
genes	transcripts
genes,TxDb-method	transcripts
getChromInfoFromBiomart	makeTxDbFromBiomart
getChromInfoFromUCSC	makeTxDbFromUCSC
getPromoterSeq	getPromoterSeq-methods
getPromoterSeq,GRanges-method	getPromoterSeq-methods
getPromoterSeq,GRangesList-method	getPromoterSeq-methods
id2name	id2name
intronsByTranscript	transcriptsBy
intronsByTranscript,TxDb-method	transcriptsBy
isActiveSeq	TxDb-class
isActiveSeq,TxDb-method	TxDb-class
isActiveSeq<-	TxDb-class
isActiveSeq<-,TxDb-method	TxDb-class
keys,TxDb-method	select-methods
keytypes,TxDb-method	select-methods
makeFDbPackageFromUCSC	makeTxDbPackage
makeFeatureDbFromUCSC	makeFeatureDbFromUCSC
makeTranscriptDb	makeTxDb
makeTranscriptDbFromBiomart	makeTxDbFromBiomart
makeTranscriptDbFromGFF	makeTxDbFromGFF
makeTranscriptDbFromUCSC	makeTxDbFromUCSC
makeTxDb	makeTxDb
makeTxDbFromBiomart	makeTxDbFromBiomart
makeTxDbFromGFF	makeTxDbFromGFF
makeTxDbFromGRanges	makeTxDbFromGRanges
makeTxDbFromUCSC	makeTxDbFromUCSC
makeTxDbPackage	makeTxDbPackage
makeTxDbPackageFromBiomart	makeTxDbPackage
makeTxDbPackageFromUCSC	makeTxDbPackage
mapFromTranscripts	coordinate-mapping-methods
mapFromTranscripts,GenomicRanges,GenomicRanges-method	coordinate-mapping-methods
mapFromTranscripts,GenomicRanges,GRangesList-method	coordinate-mapping-methods
mapToTranscripts	coordinate-mapping-methods
mapToTranscripts,ANY,TxDb-method	coordinate-mapping-methods
mapToTranscripts,GenomicRanges,GenomicRanges-method	coordinate-mapping-methods
mapToTranscripts,GenomicRanges,GRangesList-method	coordinate-mapping-methods
microRNAs	microRNAs
microRNAs,TxDb-method	microRNAs
nearest-methods	nearest-methods
organism,TxDb-method	TxDb-class
pcoverageByTranscript	coverageByTranscript
pmapFromTranscripts	coordinate-mapping-methods
pmapFromTranscripts,GenomicRanges,GenomicRanges-method	coordinate-mapping-methods
pmapFromTranscripts,GenomicRanges,GRangesList-method	coordinate-mapping-methods
pmapFromTranscripts,Ranges,GenomicRanges-method	coordinate-mapping-methods
pmapFromTranscripts,Ranges,GRangesList-method	coordinate-mapping-methods
pmapToTranscripts	coordinate-mapping-methods
pmapToTranscripts,GenomicRanges,GenomicRanges-method	coordinate-mapping-methods
pmapToTranscripts,GenomicRanges,GRangesList-method	coordinate-mapping-methods
promoters	transcripts
promoters,TxDb-method	transcripts
select,TxDb-method	select-methods
select-methods	select-methods
seqinfo,TxDb-method	TxDb-class
seqlevels0,TxDb-method	TxDb-class
seqlevels<-,TxDb-method	TxDb-class
show,TxDb-method	TxDb-class
species,TxDb-method	TxDb-class
supportedMiRBaseBuildValues	makeTxDbPackage
supportedUCSCFeatureDbTables	makeFeatureDbFromUCSC
supportedUCSCFeatureDbTracks	makeFeatureDbFromUCSC
supportedUCSCtables	makeTxDbFromUCSC
threeUTRsByTranscript	transcriptsBy
threeUTRsByTranscript,TxDb-method	transcriptsBy
transcriptLengths	transcriptLengths
transcriptLocs2refLocs	transcriptLocs2refLocs
transcripts	transcripts
transcripts,TxDb-method	transcripts
transcriptsBy	transcriptsBy
transcriptsBy,TxDb-method	transcriptsBy
transcriptsByOverlaps	transcriptsByOverlaps
transcriptsByOverlaps,TxDb-method	transcriptsByOverlaps
transcriptWidths	transcriptLocs2refLocs
tRNAs	microRNAs
tRNAs,TxDb-method	microRNAs
TxDb	TxDb-class
TxDb-class	TxDb-class
UCSCFeatureDbTableSchema	makeFeatureDbFromUCSC
