Package: FunChIP
Type: Package
Title: Clustering and Alignment of ChIP-Seq peaks based on their shapes
Version: 1.20.0
Date: 2016-07-04
Depends: R (>= 3.2), GenomicRanges
Imports: shiny, fda, doParallel, GenomicAlignments, Rcpp, methods,
        foreach, parallel, GenomeInfoDb, Rsamtools, grDevices,
        graphics, stats, RColorBrewer
Author: Alice Parodi [aut, cre], Marco Morelli [aut, cre], Laura M. Sangalli [aut], Piercesare Secchi [aut], Simone Vantini [aut]
Maintainer: Alice Parodi <alicecarla.parodi@polimi.it>
biocViews: StatisticalMethod, Clustering, ChIPSeq
Description: Preprocessing and smoothing of ChIP-Seq peaks and efficient implementation of the k-mean alignment algorithm to classify them.
NeedsCompilation: yes
LinkingTo: Rcpp
License: Artistic-2.0
LazyData: TRUE
Packaged: 2021-10-26 21:30:18 UTC; biocbuild
git_url: https://git.bioconductor.org/packages/FunChIP
git_branch: RELEASE_3_14
git_last_commit: 91d2320
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
Built: R 4.1.3; x86_64-apple-darwin13.4.0; 2022-09-23 11:04:28 UTC; unix
