addAMDISPeaks	addAMDISPeaks
addChromaTOFPeaks	addChromaTOFPeaks
addXCMSPeaks	addXCMSPeaks
betweenAlignment	betweenAlignment
betweenAlignment-class	betweenAlignment
betweenAlignment-method	betweenAlignment
betweenAlignment-show	betweenAlignment
calcTimeDiffs	calcTimeDiffs
clusterAlignment	clusterAlignment
clusterAlignment-class	clusterAlignment
clusterAlignment-plot	clusterAlignment
clusterAlignment-show	clusterAlignment
compress,peaksAlignment-method	compress-peaksAlignment-method
compress,progressiveAlignment-method	compress-progressiveAlignment-method
corPrt	corPrt
decompress,peaksAlignment-method	decompress-peaksAlignment-method
decompress,progressiveAlignment-method	decompress-progressiveAlignment-method
deDuper	deDuper
distToLib	distToLib
dp	dp
dynRT	dynRT
eitherMatrix-class	eitherMatrix-class
exportSpectra	exportSpectra
gatherInfo	gatherInfo
headToTailPlot	headToTailPlot
importSpec	importSpec
imputePeaks	imputePeaks
matchSpec	matchSpec
multipleAlignment	multipleAlignment-class
multipleAlignment-class	multipleAlignment-class
multipleAlignment-class,	multipleAlignment-class
multipleAlignment-method	multipleAlignment-class
multipleAlignment-show,	multipleAlignment-class
ndpRT	ndpRT
normDotProduct	normDotProduct
parseChromaTOF	parseChromaTOF
parseELU	parseELU
peaksAlignment	peaksAlignment-class
peaksAlignment-class	peaksAlignment-class
peaksAlignment-plot	peaksAlignment-class
peaksAlignment-show	peaksAlignment-class
peaksDataset	peaksDataset
peaksDataset-class	peaksDataset
peaksDataset-plot	peaksDataset
peaksDataset-show	peaksDataset
plot,clusterAlignment,ANY-method	clusterAlignment
plot,clusterAlignment-method	clusterAlignment
plot,peaksAlignment,ANY-method	peaksAlignment-class
plot,peaksAlignment-method	peaksAlignment-class
plot,peaksDataset,ANY-method	peaksDataset
plot,peaksDataset-method	peaksDataset
plotAlignedFrags	plotAlignedFrags
plotAlignment,peaksAlignment-method	plotAlignment-peaksAlignment-method
plotChrom,peaksDataset-method	plotChrom-peaksDataset-method
plotClustAlignment,clusterAlignment-method	plotClustAlignment-clusterAlignment-method
plotFrags	plotFrags
plotImage	plotImage
plotImage,peaksDataset-method	plotImage
progressiveAlignment	progressiveAlignment-class
progressiveAlignment-class	progressiveAlignment-class
progressiveAlignment-show	progressiveAlignment-class
retFatMatrix	retFatMatrix
rmaFitUnit	rmaFitUnit
show,	betweenAlignment
show,clusterAlignment-method	clusterAlignment
show,multipleAlignment-method	show-multipleAlignment-method
show,peaksAlignment-method	peaksAlignment-class
show,peaksDataset-method	peaksDataset
show,progressiveAlignment-method	progressiveAlignment-class
