callMethylation	callMethylation
extractPatterns	extractPatterns
generateAmpliconReport	generateBedReport
generateBedEcdf	generateBedEcdf
generateBedReport	generateBedReport
generateCaptureReport	generateBedReport
generateCytosineReport	generateCytosineReport
generateMhlReport	generateMhlReport
generateVcfReport	generateVcfReport
preprocessBam	preprocessBam
preprocessGenome	preprocessGenome
simulateBam	simulateBam
