# Utilities for Handling Single-Cell Droplet Data

## Documentation for package ‘DropletUtils’ version 1.2.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

barcodeRanks | Calculate barcode ranks
defaultDrops | Call cells from number of UMIs
downsampleMatrix | Downsample a count matrix
downsampleReads | Downsample reads in a 10X Genomics dataset
emptyDrops | Identify empty droplets
encodeSequences | Encode nucleotide sequences
get10xMolInfoStats | Get 10x cell statistics
makeCountMatrix | Make a count matrix
read10xCounts | Load in data from 10x experiment
read10xMatrix | Read in the 10x count matrix
read10xMolInfo | Read the 10X molecule information file
removeSwappedDrops | Clean barcode-swapped droplet data
swappedDrops | Clean barcode-swapped droplet data
testEmptyDrops | Identify empty droplets
write10xCounts | Write count data in the 10x format