# Generated by roxygen2: do not edit by hand

S3method(barplot,enrichResult)
S3method(fortify,enrichResult)
S3method(fortify,gseaResult)
export(EXTID2NAME)
export(GSEA_internal)
export(clusterSim)
export(cnetplot)
export(doSim)
export(dotplot)
export(enrichDO)
export(enrichMap)
export(enrichNCG)
export(enricher_internal)
export(geneSim)
export(gseDO)
export(gseNCG)
export(gseaplot)
export(gsfilter)
export(load_OrgDb)
export(mclusterSim)
export(netplot)
export(scaleNodeColor)
export(setReadable)
export(setting.graph.attributes)
export(simplot)
export(theme_dose)
export(upsetplot)
exportClasses(enrichResult)
exportClasses(gseaResult)
exportMethods(cnetplot)
exportMethods(dotplot)
exportMethods(plot)
exportMethods(show)
exportMethods(summary)
exportMethods(upsetplot)
importClassesFrom(methods,data.frame)
importFrom(DO.db,DOANCESTOR)
importFrom(DO.db,DOOFFSPRING)
importFrom(DO.db,DOPARENTS)
importFrom(DO.db,DOTERM)
importFrom(GOSemSim,combineScores)
importFrom(GOSemSim,termSim)
importFrom(ggplot2,"%+%")
importFrom(ggplot2,"%+replace%")
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,fortify)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_linerange)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplotGrob)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_color_gradient)
importFrom(ggplot2,scale_fill_continuous)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,barplot)
importFrom(graphics,hist)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(grid,grid.layout)
importFrom(grid,grid.newpage)
importFrom(grid,pushViewport)
importFrom(grid,viewport)
importFrom(igraph,"E<-")
importFrom(igraph,"V<-")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,degree)
importFrom(igraph,delete.edges)
importFrom(igraph,get.edgelist)
importFrom(igraph,graph.data.frame)
importFrom(igraph,layout.fruchterman.reingold)
importFrom(igraph,plot.igraph)
importFrom(igraph,tkplot)
importFrom(methods,new)
importFrom(methods,show)
importFrom(parallel,detectCores)
importFrom(parallel,mclapply)
importFrom(plyr,ldply)
importFrom(qvalue,qvalue)
importFrom(reshape2,melt)
importFrom(scales,cscale)
importFrom(scales,seq_gradient_pal)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats4,plot)
importFrom(stats4,summary)
importFrom(utils,read.delim)
importFrom(utils,setTxtProgressBar)
importFrom(utils,str)
importFrom(utils,txtProgressBar)
importMethodsFrom(AnnotationDbi,columns)
importMethodsFrom(AnnotationDbi,exists)
importMethodsFrom(AnnotationDbi,get)
importMethodsFrom(AnnotationDbi,keys)
importMethodsFrom(AnnotationDbi,keytypes)
importMethodsFrom(AnnotationDbi,mget)
importMethodsFrom(AnnotationDbi,select)
importMethodsFrom(AnnotationDbi,toTable)
