dba                     Construct a DBA object
DBA                     Standard S3 methods for DBA object
DBA_ID                  Constant variables used in DiffBind package
dba.analyze             Perform differential binding affinity analysis
dba.contrast            Set up contrasts for differential binding
                        affinity analysis
dba.count               Count reads in binding site intervals
dba.load                load DBA object
dba.mask                Derive a mask to define a subset of peaksets or
                        sites for a DBA object
dba.overlap             Compute binding site overlaps (occupancy
                        analysis)
dba.peakset             Add a peakset to, or retrieve a peakset from, a
                        DBA object
dba.plotBox             Boxplots
dba.plotHeatmap         Draw a binding site heatmap
dba.plotMA              Generate MA and scatter plots of differential
                        binding analysis results
dba.plotPCA             PCA plot
dba.plotVenn            Draw 2-way, 3-way, or 4-way Venn diagrams of
                        overlaps
dba.plotVolcano         Generate volcano plots of differential binding
                        analysis results
dba.report              Generate a report for a differential binding
                        affinity analysis
dba.save                save DBA object
dba.show                List attributes of peaksets of contrasts
                        associated with a DBA object
DiffBind-package        Differential Binding Analysis of ChIP-seq
                        peaksets
tamoxifen               Tamoxifen resistance dataset used for DBA
                        examples
