DEScan2-package	DEScan2
binnedCoverage	binnedCoverage
binnedCovOnly	binnedCovOnly
binToChrCoordMatRowNames	binToChrCoordMatRowNames
computeCoverageMovingWindowOnChr	computeCoverageMovingWindowOnChr
computeLambdaOnChr	computeLambdaOnChr
computeZ	computeZ
constructBedRanges	constructBedRanges
countFinalRegions	countFinalRegions
createGranges	createGranges
cutGRangesPerChromosome	cutGRangesPerChromosome
c_get_disjoint_max_win	c_get_disjoint_max_win
DEScan2	DEScan2
divideEachSampleByChromosomes	divideEachSampleByChromosomes
evenRunMean	evenRunMean
evenRunSum	evenRunSum
finalRegions	finalRegions
findOverlapsOverSamples	findOverlapsOverSamples
findPeaks	findPeaks
fromSamplesToChrsGRangesList	fromSamplesToChrsGRangesList
generateDFofSamplesPerChromosomes	generateDFofSamplesPerChromosomes
get_disjoint_max_win	get_disjoint_max_win
giveUniqueNamesToPeaksOverSamples	giveUniqueNamesToPeaksOverSamples
initMergedPeaksNames	initMergedPeaksNames
keepRelevantChrs	keepRelevantChrs
rcpparma_get_disjoint_max_win	rcpparma_get_disjoint_max_win
readBamAsBed	readBamAsBed
readBedFile	readBedFile
readFilesAsGRangesList	readFilesAsGRangesList
RleListToRleMatrix	RleListToRleMatrix
saveGRangesAsBed	saveGRangesAsBed
saveGRangesAsTsv	saveGRangesAsTsv
setGRGenomeInfo	setGRGenomeInfo
