# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /Users/distiller/project/recipes/bioconductor-deqms, last modified Mon Nov 26 08:26:55 2018
# ------------------------------------------------

package:
    name: bioconductor-deqms
    version: 1.0.0
source:
    md5: 43415cf52b11a83771f6eb5b308cce83
    url:
        - https://bioarchive.galaxyproject.org/DEqMS_1.0.0.tar.gz
        - https://bioconductor.org/packages/3.8/bioc/src/contrib/DEqMS_1.0.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-deqms/bioconductor-deqms_1.0.0_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r351_0
requirements:
    host:
        - bioconductor-limma 3.36.5 r351h470a237_0
        - ca-certificates 2018.10.15 ha4d7672_0
        - cairo 1.14.12 h276e583_5
        - curl 7.61.0 h93b3f91_2
        - fontconfig 2.13.1 hce039c3_0
        - freetype 2.9.1 h6debe1e_4
        - gettext 0.19.8.1 h1f1d5ed_1
        - glib 2.56.2 h464dc38_1
        - graphite2 1.3.12 h7d4d677_1
        - gsl 2.2.1 h002c638_3
        - harfbuzz 1.9.0 h04dbb29_1
        - icu 58.2 hfc679d8_0
        - jpeg 9c h470a237_1
        - krb5 1.14.6 0
        - libffi 3.2.1 hfc679d8_5
        - libgfortran 3.0.0 1
        - libiconv 1.15 h470a237_3
        - libpng 1.6.35 ha92aebf_2
        - libssh2 1.8.0 h5b517e9_3
        - libtiff 4.0.9 he6b73bb_2
        - libxml2 2.9.8 h422b904_5
        - ncurses 6.1 hfc679d8_1
        - openssl 1.0.2p h470a237_1
        - pango 1.40.14 he752989_2
        - pcre 8.41 hfc679d8_3
        - pixman 0.34.0 h470a237_3
        - r-assertthat 0.2.0 r351h6115d3f_1001
        - r-base 3.5.1 h4fe35fd_1
        - r-cli 1.0.0 r351h6115d3f_1001
        - r-colorspace 1.3_2 r351hc070d10_2
        - r-crayon 1.3.4 r351h6115d3f_1001
        - r-digest 0.6.18 r351hc070d10_0
        - r-fansi 0.3.0 r351hc070d10_0
        - r-ggplot2 3.1.0 r351h6115d3f_1000
        - r-glue 1.3.0 r351h470a237_2
        - r-gtable 0.2.0 r351h6115d3f_1001
        - r-labeling 0.3 r351h6115d3f_1001
        - r-lattice 0.20_35 r351hc070d10_0
        - r-lazyeval 0.2.1 r351hc070d10_2
        - r-magrittr 1.5 r351h6115d3f_1001
        - r-mass 7.3_50 r351hc070d10_2
        - r-matrix 1.2_14 r351hc070d10_2
        - r-mgcv 1.8_24 r351hc070d10_2
        - r-munsell 0.5.0 r351h6115d3f_1001
        - r-nlme 3.1_137 r351h364d78e_0
        - r-pillar 1.3.0 r351h6115d3f_1000
        - r-plyr 1.8.4 r351h9d2a408_2
        - r-r6 2.2.2 r351h6115d3f_1001
        - r-rcolorbrewer 1.1_2 r351h6115d3f_1001
        - r-rcpp 1.0.0 r351h9d2a408_0
        - r-reshape2 1.4.3 r351h9d2a408_2
        - r-rlang 0.3.0.1 r351h470a237_0
        - r-scales 1.0.0 r351h9d2a408_1
        - r-stringi 1.2.4 r351h9d2a408_1
        - r-stringr 1.3.1 r351h6115d3f_1001
        - r-tibble 1.4.2 r351hc070d10_2
        - r-utf8 1.1.4 r351hc070d10_0
        - r-viridislite 0.3.0 r351h6115d3f_1001
        - r-withr 2.1.2 r351h6115d3f_1000
        - readline 7.0 haf1bffa_1
        - tk 8.6.9 ha92aebf_0
        - xz 5.2.4 h470a237_1
        - zlib 1.2.11 h470a237_3
    run:
        - bioconductor-limma >=3.34.0,<3.40.0
        - r-base >=3.5.1,<3.5.2.0a0
        - r-ggplot2
test:
    commands:
        - $R -e "library('DEqMS')"
about:
    home: https://bioconductor.org/packages/3.8/bioc/html/DEqMS.html
    license: LGPL
    summary: DEqMS is developped on top of Limma. However, Limma assumes same prior
        variance for all genes. In proteomics, the accuracy of protein abundance estimates
        varies by the number of peptides/PSMs quantified in both label-free and labelled
        data. Proteins quantification by multiple peptides or PSMs are more accurate.
        DEqMS package is able to estimate different prior variances for proteins quantified
        by different number of PSMs/peptides, therefore acchieving better accuracy.
        The package can be applied to analyze both label-free and labelled proteomics
        data.
extra:
    copy_test_source_files: true
    final: true
