Package: DEGreport
Version: 1.14.0
Date: 2017-10-11
Type: Package
Title: Report of DEG analysis
Description: Creation of a HTML report of differential expression
    analyses of count data. It integrates some of the code
    mentioned in DESeq2 and edgeR vignettes, and report a ranked
    list of genes according to the fold changes mean and
    variability for each selected gene.
biocViews: DifferentialExpression, Visualization, RNASeq,
        ReportWriting, GeneExpression
Suggests: BiocStyle, AnnotationDbi, testthat
Depends: R (>= 3.4.0), quantreg
Imports: utils, methods, Biobase, BiocGenerics, ConsensusClusterPlus,
        S4Vectors, SummarizedExperiment, DESeq2, ggplot2, cowplot,
        ggrepel, Nozzle.R1, edgeR, cluster, logging, dplyr, tidyr,
        tibble, reshape, ComplexHeatmap, knitr, grDevices, magrittr,
        scales, stats, psych, rlang
Authors@R: c(person("Lorena", "Pantano", email = "lorena.pantano@gmail.com", 
  role = c("aut", "cre")),
  person("John", "Hutchinson", email = "@jnhutchinson", role = c("ctb")),
  person("Victor", "Barrera", email = "@vbarrera", role = c("ctb")),
  person("Mary", "Piper", email = "@marypiper", role = c("ctb")),
  person("Kenneth", "Daily", role=c("ctb")),
  person("Thanneer", "Malai Perumal", role=c("ctb")),
  person("Rory", "Kirchner", email="@roryk", role=c("ctb")),
  person("Michael", "Steinbaugh", email="@mjsteinbaugh", role=c("ctb")))
Maintainer: Lorena Pantano <lorena.pantano@gmail.com>
License: MIT + file LICENSE
VignetteBuilder: knitr
RoxygenNote: 6.0.1.9000
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
NeedsCompilation: no
Packaged: 2017-10-30 23:59:05 UTC; biocbuild
Author: Lorena Pantano [aut, cre],
  John Hutchinson [ctb],
  Victor Barrera [ctb],
  Mary Piper [ctb],
  Kenneth Daily [ctb],
  Thanneer Malai Perumal [ctb],
  Rory Kirchner [ctb],
  Michael Steinbaugh [ctb]
Built: R 3.4.1; ; 2017-11-13 00:16:23 UTC; unix
