citHeader("To cite crlmm in publications use:")

citEntry(entry="article",
  title  = "Quantifying uncertainty in genotype calls",
  author = paste("Benilton S Carvalho and",
                 "Thomas A Louis and",
                 "Rafael A Irizarry"),
  journal = "Bioinformatics",
  year = "2010",
  volume = "15;26(2)",
  pages = "242-9",
  textVersion = paste("Carvalho BS, Louis TA, Irizarry RA.",
                      "Quantifying uncertainty in genotype calls.",
                      "Bioinformatics. 2010 Jan 15;26(2):242-9."))

citEntry(entry="article",
  title  = "R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips",
  author = paste("Matthew E Ritchie and",
                 "Benilton S Carvalho and",
                 "Kurt N Hetrick and",
                 "Simon Tavar\'e and",
                 "Rafael A Irizarry"),
  journal = "Bioinformatics",
  year = "2009",
  volume = "25(19)",
  pages = "2621-3",
  textVersion = paste("Ritchie ME, Carvalho BS, Hetrick KN, Tavar\'e S.",
                      "R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.",
                      "Bioinformatics. 2009 Oct 1;25(19):2621-3."))

citEntry(entry="article",
  title  = "A multilevel model to address batch effects in copy number estimation
	using SNP arrays",
  author = paste("Robert B Scharpf and",
                 "Ingo Ruczinski and",
		 "Benilton Carvalho and",
		 "Betty Doan and",
		 "Aravinda Chakravarti and",
		 "Rafael A Irizarry"),
  journal = "Biostatistics",
  year = "2011",
  volume="12",
  pages="33--50",
  textVersion = paste("Scharpf RB, Ruczinski I, Carvalho B, Doan B, Chakravarti A, Irizarry RA",
                      "A multilevel model to address batch effects in copy number estimation using SNP arrays",
		      "Biostatistics. 2011."))

citEntry(entry = "Article",
  title        = "Using the {R} Package {crlmm} for Genotyping and Copy Number Estimation",
  author       = personList(as.person("Robert B. Scharpf"),
                   as.person("Rafael A. Irizarry"),
                   as.person("Matthew E. Ritchie"),
                   as.person("Benilton Carvalho"),
                   as.person("Ingo Ruczinski")),
  journal      = "Journal of Statistical Software",
  year         = "2011",
  volume       = "40",
  number       = "12",
  pages        = "1--32",
  url          = "http://www.jstatsoft.org/v40/i12/",

  textVersion  =
  paste("Robert B. Scharpf, Rafael A. Irizarry, Matthew E. Ritchie, Benilton Carvalho, Ingo Ruczinski (2011).",
        "Using the R Package crlmm for Genotyping and Copy Number Estimation.",
        "Journal of Statistical Software, 40(12), 1-32.",
        "URL http://www.jstatsoft.org/v40/i12/.")
)


citFooter("We have invested a lot of time and effort in creating crlmm,",
          "please cite it when using it for data analysis.")

