# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /Users/distiller/project/recipes/bioconductor-copynumber, last modified Wed Oct 10 05:26:55 2018
# ------------------------------------------------

package:
    name: bioconductor-copynumber
    version: 1.20.0
source:
    sha256: bad6db743ca26a2f12e2a538fb4b2e24bff291139223d4e3b8f0ea0b16b73679
    url:
        - http://bioconductor.org/packages/3.7/bioc/src/contrib/copynumber_1.20.0.tar.gz
        - https://bioarchive.galaxyproject.org/copynumber_1.20.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-copynumber/bioconductor-copynumber_1.20.0_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r351_0
requirements:
    host:
        - bioconductor-biocgenerics 0.26.0 r351_0
        - bioconductor-genomeinfodb 1.16.0 r351_0
        - bioconductor-genomeinfodbdata 1.1.0 r351_0
        - bioconductor-genomicranges 1.32.7 r351h470a237_0
        - bioconductor-iranges 2.14.12 r351h470a237_0
        - bioconductor-s4vectors 0.18.3 r351h470a237_0
        - bioconductor-xvector 0.20.0 r351h470a237_0
        - bioconductor-zlibbioc 1.26.0 r351h470a237_0
        - ca-certificates 2018.8.24 ha4d7672_0
        - cairo 1.14.12 h276e583_5
        - curl 7.61.0 h93b3f91_2
        - fontconfig 2.13.1 hce039c3_0
        - freetype 2.9.1 h6debe1e_4
        - gettext 0.19.8.1 h1f1d5ed_1
        - glib 2.56.2 h464dc38_0
        - graphite2 1.3.12 h7d4d677_1
        - gsl 2.2.1 h002c638_3
        - harfbuzz 1.9.0 hee26f79_1
        - icu 58.2 hfc679d8_0
        - jpeg 9c h470a237_1
        - krb5 1.14.6 0
        - libffi 3.2.1 hfc679d8_5
        - libgfortran 3.0.0 1
        - libiconv 1.15 h470a237_3
        - libpng 1.6.35 ha92aebf_2
        - libssh2 1.8.0 h5b517e9_2
        - libtiff 4.0.9 he6b73bb_2
        - libxml2 2.9.8 h422b904_5
        - ncurses 6.1 hfc679d8_1
        - openssl 1.0.2p h470a237_0
        - pango 1.40.14 he752989_2
        - pcre 8.41 hfc679d8_3
        - pixman 0.34.0 h470a237_3
        - r-base 3.5.1 h4fe35fd_1
        - r-bitops 1.0_6 r351hc070d10_2
        - r-rcurl 1.95_4.11 r351h86b9717_2
        - readline 7.0 haf1bffa_1
        - tk 8.6.8 ha92aebf_0
        - wget 1.19.5 hf30b1f0_0
        - xz 5.2.4 h470a237_1
        - zlib 1.2.11 h470a237_3
    run:
        - bioconductor-biocgenerics >=0.26.0,<0.28.0
        - bioconductor-genomicranges >=1.32.7,<1.34.0
        - bioconductor-iranges >=2.14.12,<2.16.0
        - bioconductor-s4vectors >=0.18.3,<0.20.0
        - r-base >=3.5.1,<3.5.2.0a0
test:
    commands:
        - $R -e "library('copynumber')"
about:
    home: http://bioconductor.org/packages/3.7/bioc/html/copynumber.html
    license: Artistic-2.0
    summary: Penalized least squares regression is applied to fit piecewise constant
        curves to copy number data to locate genomic regions of constant copy number.
        Procedures are available for individual segmentation of each sample, joint
        segmentation of several samples and joint segmentation of the two data tracks
        from SNP-arrays. Several plotting functions are available for visualization
        of the data and the segmentation results.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:copynumber
