Package: CNPBayes
Type: Package
Title: Bayesian mixture models for copy number polymorphisms
Version: 1.12.0
Maintainer: Jacob Carey <jcarey15@jhu.edu>
Description: Bayesian hierarchical mixture models for batch effects and copy number.
Date: Tue Jan 20 20:41:00 EST 2015
Author: Stephen Cristiano, Robert Scharpf, and Jacob Carey
Depends: R (>= 3.4.0), IRanges, GenomicRanges
Imports: Rcpp (>= 0.12.1), S4Vectors, matrixStats, RColorBrewer,
        gtools, combinat, GenomeInfoDb (>= 1.11.6), methods,
        BiocGenerics, graphics, stats, coda, SummarizedExperiment,
        mclust, reshape2, ggplot2, magrittr, purrr, tidyr, dplyr,
        tibble, scales
Suggests: testthat, knitr, BiocStyle, rmarkdown, BiocCheck, MASS,
        VanillaICE, tidyverse
Collate: 'help.R' 'AllGenerics.R' 'AllClasses.R' 'Cfunctions.R'
        'Defunct-classes.R' 'RcppExports.R' 'coerce-methods.R'
        'copynumber-models.R' 'data.R' 'defunct-functions.R'
        'functions.R' 'genotype_cnps.R' 'gibbs.R'
        'marginal_likelihood.R' 'methods-Hyperparameters.R'
        'methods-McmcChains.R' 'methods-McmcParams.R'
        'methods-MixtureModel.R' 'methods-MultiBatchModel.R'
        'methods-MultiBatchPooled.R' 'methods-SingleBatchModel.R'
        'methods-SBPt.R' 'methods-SingleBatchPooled.R'
        'methods-SummarizedExperiment.R' 'model_initialization.R'
        'plot-functions.R' 'posteriorSimulation-methods.R'
        'relabeling.R' 'simulate_data.R'
VignetteBuilder: knitr
License: Artistic-2.0
LinkingTo: Rcpp
biocViews: CopyNumberVariation, Bayesian
Roxygen: list(wrap=FALSE)
LazyData: TRUE
URL: https://github.com/scristia/CNPBayes
BugReports: https://github.com/scristia/CNPBayes/issues
NeedsCompilation: yes
Encoding: UTF-8
RoxygenNote: 6.1.0
git_url: https://git.bioconductor.org/packages/CNPBayes
git_branch: RELEASE_3_8
git_last_commit: 01190fc
git_last_commit_date: 2018-10-30
Date/Publication: 2018-10-30
Packaged: 2018-10-31 01:01:06 UTC; biocbuild
Built: R 3.5.1; x86_64-apple-darwin13.4.0; 2018-12-10 14:47:25 UTC; unix
