# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /Users/distiller/project/recipes/bioconductor-cn.mops, last modified Mon Dec 10 03:33:09 2018
# ------------------------------------------------

package:
    name: bioconductor-cn.mops
    version: 1.28.0
source:
    md5: c6736a533b5a4a5832b974bf0f33389b
    url:
        - https://bioarchive.galaxyproject.org/cn.mops_1.28.0.tar.gz
        - https://bioconductor.org/packages/3.8/bioc/src/contrib/cn.mops_1.28.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-cn.mops/bioconductor-cn.mops_1.28.0_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r351h0a44026_0
requirements:
    build:
        - cctools 895 h7512d6f_0
        - clang 4.0.1 h662ec87_0
        - clang_osx-64 4.0.1 h1ce6c1d_11
        - clangxx 4.0.1 hc9b4283_0
        - clangxx_osx-64 4.0.1 h22b1bf0_11
        - compiler-rt 4.0.1 h5487866_0
        - ld64 274.2 h7c2db76_0
        - libcxx 4.0.1 h579ed51_0
        - libcxxabi 4.0.1 hebd6815_0
        - llvm 4.0.1 hc748206_0
        - llvm-lto-tapi 4.0.1 h6701bc3_0
        - make 4.2.1 h1de35cc_2002
    host:
        - _r-mutex 1.0.0 anacondar_1
        - bioconductor-biobase 2.42.0 r351h470a237_0
        - bioconductor-biocgenerics 0.28.0 r351_1
        - bioconductor-biocparallel 1.16.2 r351hfc679d8_0
        - bioconductor-biostrings 2.50.1 r351h1de35cc_0
        - bioconductor-exomecopy 1.28.0 r351h1de35cc_0
        - bioconductor-genomeinfodb 1.18.1 r351_0
        - bioconductor-genomeinfodbdata 1.2.0 r351_0
        - bioconductor-genomicranges 1.34.0 r351h1de35cc_0
        - bioconductor-iranges 2.16.0 r351h1de35cc_0
        - bioconductor-rsamtools 1.34.0 r351h0a44026_0
        - bioconductor-s4vectors 0.20.1 r351h470a237_0
        - bioconductor-xvector 0.22.0 r351h1de35cc_0
        - bioconductor-zlibbioc 1.28.0 r351h1de35cc_0
        - bwidget 1.9.11 1
        - bzip2 1.0.6 h1de35cc_1002
        - ca-certificates 2018.10.15 ha4d7672_0
        - cairo 1.14.12 h9d4d9ac_1005
        - cctools 895 1
        - clang 4.0.1 1
        - clang_osx-64 4.0.1 h1ce6c1d_11
        - clangxx 4.0.1 1
        - clangxx_osx-64 4.0.1 h22b1bf0_11
        - compiler-rt 4.0.1 hcfea43d_1
        - curl 7.62.0 heae2a1f_1000
        - fontconfig 2.13.1 h1e4e890_1000
        - freetype 2.9.1 h5a5313f_1004
        - gettext 0.19.8.1 hcca000d_1001
        - gfortran_osx-64 4.8.5 h22b1bf0_5
        - glib 2.56.2 h67dad55_1001
        - graphite2 1.3.12 h2098e52_1001
        - harfbuzz 1.9.0 h9889186_1001
        - icu 58.2 h0a44026_1000
        - jpeg 9c h1de35cc_1001
        - krb5 1.16.2 h24a3359_1000
        - ld64 274.2 1
        - libcurl 7.62.0 h76de61e_1000
        - libcxx 4.0.1 hcfea43d_1
        - libcxxabi 4.0.1 hcfea43d_1
        - libedit 3.1.20170329 hcfe32e1_1001
        - libffi 3.2.1 h0a44026_1005
        - libgfortran 3.0.1 h93005f0_2
        - libiconv 1.15 h1de35cc_1003
        - libpng 1.6.36 ha441bb4_1000
        - libssh2 1.8.0 hf30b1f0_1003
        - libtiff 4.0.10 h79f4b77_1000
        - libxml2 2.9.8 hf14e9c8_1005
        - llvm 4.0.1 1
        - llvm-lto-tapi 4.0.1 1
        - llvm-openmp 4.0.1 hcfea43d_1
        - make 4.2.1 h1de35cc_2002
        - ncurses 6.1 h0a44026_1001
        - openssl 1.0.2p h1de35cc_1001
        - pango 1.40.14 h1401c9d_1002
        - pcre 8.41 h0a44026_1003
        - pixman 0.34.0 h1de35cc_1003
        - r-base 3.5.1 he1ce5cd_1005
        - r-bh 1.66.0_1 r351_2001
        - r-bitops 1.0_6 r351h46e59ec_1002
        - r-formatr 1.5 r351h6115d3f_1001
        - r-futile.logger 1.4.3 r351h6115d3f_1001
        - r-futile.options 1.0.1 r351h6115d3f_1000
        - r-lambda.r 1.2.3 r351h6115d3f_1000
        - r-rcurl 1.95_4.11 r351h46e59ec_1003
        - r-snow 0.4_3 r351h6115d3f_1000
        - readline 7.0 hcfe32e1_1001
        - tk 8.6.9 ha441bb4_1000
        - tktable 2.10 h1de35cc_0
        - wget 1.19.5 hf30b1f0_0
        - xz 5.2.4 h1de35cc_1001
        - zlib 1.2.11 h1de35cc_1003
    run:
        - bioconductor-biobase >=2.42.0,<2.43.0
        - bioconductor-biocgenerics >=0.28.0,<0.29.0
        - bioconductor-exomecopy >=1.28.0,<1.29.0
        - bioconductor-genomeinfodb >=1.18.0,<1.19.0
        - bioconductor-genomicranges >=1.34.0,<1.35.0
        - bioconductor-iranges >=2.16.0,<2.17.0
        - bioconductor-rsamtools >=1.34.0,<1.35.0
        - bioconductor-s4vectors >=0.20.0,<0.21.0
        - libcxx >=4.0.1
        - r-base >=3.5.1,<3.5.2.0a0
test:
    commands:
        - $R -e "library('cn.mops')"
about:
    home: https://bioconductor.org/packages/3.8/bioc/html/cn.mops.html
    license: LGPL (>= 2.0)
    summary: cn.mops (Copy Number estimation by a Mixture Of PoissonS) is a data processing
        pipeline for copy number variations and aberrations (CNVs and CNAs) from next
        generation sequencing (NGS) data. The package supplies functions to convert
        BAM files into read count matrices or genomic ranges objects, which are the
        input objects for cn.mops. cn.mops models the depths of coverage across samples
        at each genomic position. Therefore, it does not suffer from read count biases
        along chromosomes. Using a Bayesian approach, cn.mops decomposes read variations
        across samples into integer copy numbers and noise by its mixture components
        and Poisson distributions, respectively. cn.mops guarantees a low FDR because
        wrong detections are indicated by high noise and filtered out. cn.mops is
        very fast and written in C++.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:cn.mops
