chimeraviz-package	chimeraviz
.fusionsToGeneLabelData	chimeraviz-internals-fusionsToGeneLabelData
.fusionsToLinkData	chimeraviz-internals-fusionsToLinkData
.scaleListToInterval	chimeraviz-internals-scaleListToInterval
addFusionReadsAlignment	addFusionReadsAlignment
chimeraviz	chimeraviz
chimeraviz-internals-fusionsToGeneLabelData	chimeraviz-internals-fusionsToGeneLabelData
chimeraviz-internals-fusionsToLinkData	chimeraviz-internals-fusionsToLinkData
chimeraviz-internals-scaleListToInterval	chimeraviz-internals-scaleListToInterval
createFusionReport	createFusionReport
decideTranscriptCategory	decideTranscriptCategory
downstreamPartnerGene	downstreamPartnerGene
downstreamPartnerGene,Fusion-method	downstreamPartnerGene
downstreamPartnerGene<-	downstreamPartnerGene
downstreamPartnerGene<-,Fusion-method	downstreamPartnerGene
fetchReadsFromFastq	fetchReadsFromFastq
Fusion	Fusion-class
Fusion-class	Fusion-class
fusionSpanningReadsCount	fusionSpanningReadsCount
fusionSpanningReadsCount,Fusion-method	fusionSpanningReadsCount
fusionSplitReadsCount	fusionSplitReadsCount
fusionSplitReadsCount,Fusion-method	fusionSplitReadsCount
fusionToDataFrame	fusionToDataFrame
getEnsemblIds	getEnsemblIds
getFusionByChromosome	getFusionByChromosome
getFusionByGeneName	getFusionByGeneName
getFusionById	getFusionById
getTranscriptsEnsembldb	getTranscriptsEnsembldb
importDefuse	importDefuse
importEricscript	importEricscript
importFunctionNonUCSC	importFunctionNonUCSC
importFusioncatcher	importFusioncatcher
importFusionmap	importFusionmap
importInfusion	importInfusion
importJaffa	importJaffa
importPrada	importPrada
importSoapfuse	importSoapfuse
importStarfusion	importStarfusion
PartnerGene	PartnerGene-class
PartnerGene-class	PartnerGene-class
partnerGeneEnsemblId	partnerGeneEnsemblId
partnerGeneEnsemblId,PartnerGene-method	partnerGeneEnsemblId
partnerGeneEnsemblId<-	partnerGeneEnsemblId
partnerGeneEnsemblId<-,PartnerGene-method	partnerGeneEnsemblId
partnerGeneJunctionSequence	partnerGeneJunctionSequence
partnerGeneJunctionSequence,PartnerGene-method	partnerGeneJunctionSequence
plotCircle	plotCircle
plotFusion	plotFusion
plotFusionReads	plotFusionReads
plotFusionSeparate	plotFusion
plotFusionTogether	plotFusion
plotFusionTranscript	plotFusionTranscript
plotFusionTranscriptsGraph	plotFusionTranscriptsGraph
plotTranscripts	plotTranscripts
raw_cytobandhg19	raw_cytobandhg19
raw_cytobandhg38	raw_cytobandhg38
raw_defuse	raw_defuse
raw_ericscript	raw_ericscript
raw_fusion5267reads	raw_fusion5267reads
raw_fusioncatcher	raw_fusioncatcher
raw_fusionmap	raw_fusionmap
raw_Homo_sapiens.GRCh37.74	raw_Homo_sapiens.GRCh37.74
raw_infusion	raw_infusion
raw_jaffa	raw_jaffa
raw_prada	raw_prada
raw_soapfuse	raw_soapfuse
raw_starfusion	raw_starfusion
selectTranscript	selectTranscript
show,Fusion-method	show-Fusion-method
show,PartnerGene-method	show-PartnerGene-method
splitOnUtrAndAddFeature	splitOnUtrAndAddFeature
upstreamPartnerGene	upstreamPartnerGene
upstreamPartnerGene,Fusion-method	upstreamPartnerGene
upstreamPartnerGene<-	upstreamPartnerGene
upstreamPartnerGene<-,Fusion-method	upstreamPartnerGene
writeFusionReference	writeFusionReference
