{% set version = "1.32.0" %}
{% set name = "chimera" %}
{% set bioc = "3.12" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
  md5: d7366dc1526e56af09d32a424aef7745
build:
  number: 1
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: BiocParallel, geneplotter
# SystemRequirements: STAR, TopHat, bowtie and samtools are required for some functionalities
requirements:
  host:
    - 'bioconductor-annotationdbi >=1.52.0,<1.53.0'
    - 'bioconductor-biobase >=2.50.0,<2.51.0'
    - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
    - 'bioconductor-genomicalignments >=1.26.0,<1.27.0'
    - 'bioconductor-genomicranges >=1.42.0,<1.43.0'
    - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
    - 'bioconductor-rsamtools >=2.6.0,<2.7.0'
    - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
    - r-base
    - libblas
    - liblapack
    - star
  run:
    - 'bioconductor-annotationdbi >=1.52.0,<1.53.0'
    - 'bioconductor-biobase >=2.50.0,<2.51.0'
    - 'bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.0,<1.5.0'
    - 'bioconductor-genomicalignments >=1.26.0,<1.27.0'
    - 'bioconductor-genomicranges >=1.42.0,<1.43.0'
    - 'bioconductor-homo.sapiens >=1.3.0,<1.4.0'
    - 'bioconductor-rsamtools >=2.6.0,<2.7.0'
    - 'bioconductor-txdb.hsapiens.ucsc.hg19.knowngene >=3.2.0,<3.3.0'
    - r-base
    - star
  build:
    - {{ compiler('c') }}
    - {{ compiler('cxx') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: Artistic-2.0
  summary: 'A package for secondary analysis of fusion products'
  description: 'This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.'
extra:
  parent_recipe:
    name: bioconductor-chimera
    path: recipes/bioconductor-chimera
    version: 1.22.0

