Package: chimera
Type: Package
Title: A package for secondary analysis of fusion products
Version: 1.20.0
Date: 31 March 2015
Author: Raffaele A Calogero, Matteo Carrara, Marco Beccuti, Francesca Cordero 
Maintainer: Raffaele A Calogero <raffaele.calogero@unito.it>
Depends: Biobase, GenomicRanges (>= 1.13.3), Rsamtools (>= 1.13.1),
        GenomicAlignments, methods, AnnotationDbi,
        BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene,
        Homo.sapiens
Suggests: BiocParallel, geneplotter
Enhances: Rsubread, BSgenome.Mmusculus.UCSC.mm9,
        TxDb.Mmusculus.UCSC.mm9.knownGene,
        BSgenome.Mmusculus.UCSC.mm10,
        TxDb.Mmusculus.UCSC.mm10.knownGene, Mus.musculus,
        BSgenome.Hsapiens.NCBI.GRCh38,
        TxDb.Hsapiens.UCSC.hg38.knownGene
Description: This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders:  chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.
biocViews: Infrastructure
SystemRequirements: STAR, TopHat, bowtie and samtools are required for
        some functionalities
License: Artistic-2.0
NeedsCompilation: yes
Packaged: 2017-10-30 23:38:50 UTC; biocbuild
Built: R 3.4.1; x86_64-apple-darwin14.5.0; 2017-11-16 08:29:06 UTC; unix
