bivar.awk	bivar.awk
CeTF	CeTF-class
CeTF-class	CeTF-class
CeTFdemo	CeTFdemo
CircosTargets	CircosTargets
clustCoef	clustCoef
clustCoefPercentage	clustCoefPercentage
densityPlot	densityPlot
diffusion	diffusion
enrichdemo	enrichdemo
enrichPlot	enrichPlot
expDiff	expDiff
getData	getData-methods
getData,CeTF-method	getData-methods
getDE	getDE-methods
getDE,CeTF-method	getDE-methods
getEnrich	getEnrich
getGroupGO	getGroupGO
gtfToBed	gtfToBed
heatPlot	heatPlot
histPlot	histPlot
InputData	InputData-methods
InputData,CeTF-method	InputData-methods
netConditionsPlot	netConditionsPlot
netGOTFPlot	netGOTFPlot
NetworkData	NetworkData-methods
NetworkData,CeTF-method	NetworkData-methods
normExp	normExp
OutputData	OutputData-methods
OutputData,CeTF-method	OutputData-methods
PCIT	PCIT
pcitC	pcitC
refGenes	refGenes
RIF	RIF
RIFPlot	RIFPlot
RIF_input	RIF_input
runAnalysis	runAnalysis
simCounts	simCounts
simNorm	simNorm
SmearPlot	SmearPlot
TFs	TFs
tolerance	tolerance
