$,ContigCellDB-method	cash-ContigCellDB-method
$<-,ContigCellDB-method	cash-ContigCellDB-method
.cluster_permute_test	dot-cluster_permute_test
canonicalize_cell	canonicalize_cell
canonicalize_cluster	canonicalize_cluster
ccdb_ex	ccdb_ex
ccdb_join	ccdb_join
cdhit	cdhit
cdhit_ccdb	cdhit_ccdb
cland	cland
cluster_filterset	cluster_filterset
cluster_germline	cluster_germline
cluster_logistic_test	cluster_logistic_test
cluster_permute_test	cluster_permute_test
cluster_plot	cluster_plot
cluster_test_by	cluster_logistic_test
ContigCellDB	ContigCellDB-fun
ContigCellDB-mutate	cash-ContigCellDB-method
ContigCellDB_10XVDJ	ContigCellDB-fun
contigs_qc	contigs_qc
crosstab_by_celltype	crosstab_by_celltype
cross_tab_tbl	cross_tab_tbl
dim,ContigCellDB-method	sub-sub-ContigCellDB-character-missing-method
dimnames,ContigCellDB-method	sub-sub-ContigCellDB-character-missing-method
entropy	entropy
enumerate_pairing	enumerate_pairing
equalize_ccdb	equalize_ccdb
fancy_name_contigs	fancy_name_contigs
filter_cdb	mutate_cdb
fine_clustering	fine_clustering
fine_cluster_seqs	fine_cluster_seqs
generate_pseudobulk	generate_pseudobulk
guess_celltype	guess_celltype
hushWarning	hushWarning
ig_chain_recode	enumerate_pairing
left_join_warn	left_join_warn
map_axis_labels	map_axis_labels
modal_category	entropy
mutate_cdb	mutate_cdb
ncol,ContigCellDB-method	sub-sub-ContigCellDB-character-missing-method
np	entropy
nrow,ContigCellDB-method	sub-sub-ContigCellDB-character-missing-method
pairing_tables	pairing_tables
plot_cluster_factors	plot_cluster_factors
plot_permute_test	cluster_permute_test
purity	purity
rank_chain_ccdb	rank_prevalence_ccdb
rank_prevalence_ccdb	rank_prevalence_ccdb
rbind,ContigCellDB-method	rbind-ContigCellDB-method
rbind.ContigCellDB	rbind-ContigCellDB-method
right_join_warn	left_join_warn
split_cdb	split_cdb
tcr_chain_recode	enumerate_pairing
[,ContigCellDB,ANY,missing,ANY-method	sub-sub-ContigCellDB-character-missing-method
[,ContigCellDB,ANY,missing-method	sub-sub-ContigCellDB-character-missing-method
[[,ContigCellDB,character,missing-method	sub-sub-ContigCellDB-character-missing-method
