appendCeldaList	appendCeldaList
availableModels	availableModels
bestLogLikelihood	bestLogLikelihood
bestLogLikelihood,celdaModel-method	bestLogLikelihood-celdaModel-method
celda	celda
celdaCGGridSearchRes	celdaCGGridSearchRes
celdaCGMod	celdaCGMod
celdaCGSim	celdaCGSim
celdaCMod	celdaCMod
celdaCSim	celdaCSim
celdaGMod	celdaGMod
celdaGridSearch	celdaGridSearch
celdaGSim	celdaGSim
celdaHeatmap	celdaHeatmap
celdaHeatmap,celda_C-method	celdaHeatmap-celda_C-method
celdaHeatmap,celda_CG-method	celdaHeatmap-celda_CG-method
celdaHeatmap,celda_G-method	celdaHeatmap-celda_G-method
celdaPerplexity	celdaPerplexity
celdaPerplexity,celdaList-method	celdaPerplexity-celdaList-method
celdaProbabilityMap	celdaProbabilityMap
celdaProbabilityMap,celda_C-method	celdaProbabilityMap-celda_C-method
celdaProbabilityMap,celda_CG-method	celdaProbabilityMap-celda_CG-method
celdaTsne	celdaTsne
celdaTsne,celda_C-method	celdaTsne-celda_C-method
celdaTsne,celda_CG-method	celdaTsne-celda_CG-method
celdaTsne,celda_G-method	celdaTsne-celda_G-method
celdaUmap	celdaUmap
celdaUmap,celda_C-method	celdaUmap-celda_C-method
celdaUmap,celda_CG-method	celdaUmap-celda_CG-method
celdaUmap,celda_G-method	celdaUmap-celda_G-method
celda_C	celda_C
celda_CG	celda_CG
celda_G	celda_G
clusterProbability	clusterProbability
clusterProbability,celda_C-method	clusterProbability-celda_C-method
clusterProbability,celda_CG-method	clusterProbability-celda_CG-method
clusterProbability,celda_G-method	clusterProbability-celda_G-method
clusters	clusters
clusters,celdaModel-method	clusters-celdaModel-method
compareCountMatrix	compareCountMatrix
contaminationSim	contaminationSim
countChecksum	countChecksum
countChecksum,celdaList-method	countChecksum-celdaList-method
decontX	decontX
decontX,ANY-method	decontX
decontX,SingleCellExperiment-method	decontX
decontXcounts	decontXcounts
decontXcounts<-	decontXcounts
differentialExpression	differentialExpression
distinctColors	distinctColors
eigenMatMultInt	eigenMatMultInt
factorizeMatrix	factorizeMatrix
factorizeMatrix,celda_C-method	factorizeMatrix-celda_C-method
factorizeMatrix,celda_CG-method	factorizeMatrix-celda_CG-method
factorizeMatrix,celda_G-method	factorizeMatrix-celda_G-method
fastNormProp	fastNormProp
fastNormPropLog	fastNormPropLog
fastNormPropSqrt	fastNormPropSqrt
featureModuleLookup	featureModuleLookup
featureModuleLookup,celda_C-method	featureModuleLookup-celda_C-method
featureModuleLookup,celda_CG-method	featureModuleLookup-celda_CG-method
featureModuleLookup,celda_G-method	featureModuleLookup-celda_G-method
featureModuleTable	featureModuleTable
findMarkersTree	findMarkersTree
geneSetEnrich	geneSetEnrich
getDecisions	getDecisions
logLikelihood	logLikelihood
logLikelihoodcelda_C	logLikelihoodcelda_C
logLikelihoodcelda_CG	logLikelihoodcelda_CG
logLikelihoodcelda_G	logLikelihoodcelda_G
logLikelihoodHistory	logLikelihoodHistory
logLikelihoodHistory,celdaModel-method	logLikelihoodHistory-celdaModel-method
matrixNames	matrixNames
matrixNames,celdaModel-method	matrixNames-celdaModel-method
moduleHeatmap	moduleHeatmap
nonzero	nonzero
normalizeCounts	normalizeCounts
params	params
params,celdaModel-method	params-celdaModel-method
perplexity	perplexity
perplexity,celda_C-method	perplexity-celda_C-method
perplexity,celda_CG-method	perplexity-celda_CG-method
perplexity,celda_G-method	perplexity-celda_G-method
plotCeldaViolin	plotCeldaViolin
plotDecontXContamination	plotDecontXContamination
plotDecontXMarkerExpression	plotDecontXMarkerExpression
plotDecontXMarkerPercentage	plotDecontXMarkerPercentage
plotDimReduceCluster	plotDimReduceCluster
plotDimReduceFeature	plotDimReduceFeature
plotDimReduceGrid	plotDimReduceGrid
plotDimReduceModule	plotDimReduceModule
plotGridSearchPerplexity	plotGridSearchPerplexity
plotGridSearchPerplexitycelda_C	plotGridSearchPerplexitycelda_C
plotGridSearchPerplexitycelda_CG	plotGridSearchPerplexitycelda_CG
plotGridSearchPerplexitycelda_G	plotGridSearchPerplexitycelda_G
plotHeatmap	plotHeatmap
plotMarkerDendro	plotMarkerDendro
plotMarkerHeatmap	plotMarkerHeatmap
recodeClusterY	recodeClusterY
recodeClusterZ	recodeClusterZ
recursiveSplitCell	recursiveSplitCell
recursiveSplitModule	recursiveSplitModule
resamplePerplexity	resamplePerplexity
resList	resList
resList,celdaList-method	resList-celdaList-method
retrieveFeatureIndex	retrieveFeatureIndex
runParams	runParams
runParams,celdaList-method	runParams-celdaList-method
sampleCells	sampleCells
sampleLabel	sampleLabel
sampleLabel,celdaModel-method	sampleLabel-celdaModel-method
selectBestModel	selectBestModel
semiPheatmap	semiPheatmap
simulateCells	simulateCells
simulateCellscelda_C	simulateCellscelda_C
simulateCellscelda_CG	simulateCellscelda_CG
simulateCellscelda_G	simulateCellscelda_G
simulateContamination	simulateContamination
subsetCeldaList	subsetCeldaList
topRank	topRank
