# Generated by roxygen2: do not edit by hand

S3method(bpr_optim,list)
S3method(bpr_optim,matrix)
S3method(design_matrix,fourier)
S3method(design_matrix,polynomial)
S3method(design_matrix,rbf)
S3method(eval_function,fourier)
S3method(eval_function,polynomial)
S3method(eval_function,rbf)
export(betareg_gradient)
export(betareg_log_likelihood)
export(boxplot_cluster_expr)
export(bpr_cluster_wrap)
export(bpr_gradient)
export(bpr_log_likelihood)
export(bpr_optim)
export(bpr_predict_wrap)
export(cluster_profiles_mle)
export(cluster_profiles_vb)
export(create_anno_region)
export(create_fourier_object)
export(create_polynomial_object)
export(create_rbf_object)
export(create_region_object)
export(design_matrix)
export(eval_function)
export(eval_probit_function)
export(impute_bulk_met)
export(infer_profiles_gibbs)
export(infer_profiles_mle)
export(infer_profiles_vb)
export(inner_predict_model_expr)
export(inner_train_model_expr)
export(lr_log_likelihood)
export(old_boxplot_cluster_gex)
export(old_plot_cluster_prof)
export(old_plot_fitted_profiles)
export(partition_bulk_dataset)
export(plot_cluster_profiles)
export(plot_infer_profiles)
export(plot_predicted_expr)
export(pool_bs_seq_rep)
export(predict_expr)
export(preprocess_bs_seq)
export(preprocess_final_HTS_data)
export(process_haib_caltech_wrap)
export(read_anno)
export(read_bs_encode_haib)
export(read_chrom_size)
export(read_expr)
export(read_met)
export(read_rna_encode_caltech)
export(sum_weighted_betareg_grad)
export(sum_weighted_betareg_lik)
export(sum_weighted_bpr_grad)
export(sum_weighted_bpr_lik)
import(GenomicRanges)
import(ggplot2)
importFrom(Rcpp,evalCpp)
importFrom(cowplot,plot_grid)
importFrom(data.table,":=")
importFrom(magrittr,"%>%")
importFrom(matrixcalc,matrix.trace)
importFrom(methods,is)
importFrom(stats,dbinom)
importFrom(stats,dnorm)
importFrom(stats,formula)
importFrom(stats,lm)
importFrom(stats,optim)
importFrom(stats,pnorm)
importFrom(stats,predict)
useDynLib(BPRMeth)
