Package: BiSeq
Type: Package
Title: Processing and analyzing bisulfite sequencing data
Version: 1.18.0
Date: 2015-06-18
Author: Katja Hebestreit, Hans-Ulrich Klein
Maintainer: Katja Hebestreit <katjah@stanford.edu>
Depends: R (>= 2.15.2), methods, S4Vectors, IRanges (>= 1.17.24),
        GenomicRanges, SummarizedExperiment (>= 0.2.0), Formula
Imports: methods, BiocGenerics, Biobase, S4Vectors, IRanges,
        GenomeInfoDb, GenomicRanges, SummarizedExperiment, rtracklayer,
        parallel, betareg, lokern, Formula, globaltest
Description: The BiSeq package provides useful classes and functions to
        handle and analyze targeted bisulfite sequencing (BS) data such
        as reduced-representation bisulfite sequencing (RRBS) data. In
        particular, it implements an algorithm to detect differentially
        methylated regions (DMRs). The package takes already aligned BS
        data from one or multiple samples.
License: LGPL-3
biocViews: Genetics, Sequencing, MethylSeq, DNAMethylation
NeedsCompilation: no
Packaged: 2017-10-30 23:41:55 UTC; biocbuild
Built: R 3.4.1; ; 2017-11-10 06:30:28 UTC; unix
