Package: biovizBase
Version: 1.20.0
Title: Basic graphic utilities for visualization of genomic data.
Description: The biovizBase package is designed to provide a set of
        utilities, color schemes and conventions for genomic data. It
        serves as the base for various high-level packages for
        biological data visualization. This saves development effort
        and encourages consistency.
Authors@R: c(person("Tengfei", "Yin", role=c("aut"),
                 email="yintengfei@gmail.com"),
          person("Michael", "Lawrence", role=c("aut", "ths", "cre"),
                 email="lawrence.michael@gene.com"),
          person("Dianne", "Cook", role=c("aut", "ths")),
          person("Johannes", "Rainer", role="ctb"))
Depends: R (>= 2.10), methods
Imports: grDevices, stats, scales, Hmisc, RColorBrewer, dichromat,
        BiocGenerics, S4Vectors (>= 0.9.25), IRanges (>= 1.99.28),
        GenomeInfoDb (>= 1.5.14), GenomicRanges (>= 1.23.21),
        SummarizedExperiment, Biostrings (>= 2.33.11), Rsamtools (>=
        1.17.28), GenomicAlignments (>= 1.1.16), GenomicFeatures (>=
        1.21.19), AnnotationDbi, VariantAnnotation (>= 1.11.4),
        ensembldb (>= 1.3.8)
Suggests: BSgenome.Hsapiens.UCSC.hg19,
        TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer,
        EnsDb.Hsapiens.v75, RUnit
License: Artistic-2.0
LazyLoad: Yes
Collate: utils.R color.R AllGenerics.R crunch-method.R mold-method.R
        addStepping-method.R getFragLength-method.R
        shrinkageFun-method.R maxGap-method.R spliceSummary-method.R
        ideogram.R pileup.R coverage.R labs.R original.R transform.R
        facets-method.R aes.R scale.R zzz.R biovizBase-package.R
biocViews: Infrastructure, Visualization, Preprocessing
Author: Tengfei Yin [aut],
  Michael Lawrence [aut, ths, cre],
  Dianne Cook [aut, ths],
  Johannes Rainer [ctb]
Maintainer: Michael Lawrence <lawrence.michael@gene.com>
Built: R 3.3.1; x86_64-apple-darwin11.0.0; 2016-11-03 14:06:10 UTC; unix
