BASiCS-defunct	BASiCS-defunct
BASiCS_Chain	BASiCS_Chain
BASiCS_Chain-class	BASiCS_Chain
BASiCS_Chain-methods	BASiCS_Chain-methods
BASiCS_CorrectOffset	BASiCS_CorrectOffset
BASiCS_DenoisedCounts	BASiCS_DenoisedCounts
BASiCS_DenoisedRates	BASiCS_DenoisedRates
BASiCS_DetectHVG	BASiCS_DetectVG
BASiCS_DetectHVGLVG	BASiCS_DetectVG
BASiCS_DetectHVG_LVG	BASiCS_DetectVG
BASiCS_DetectLVG	BASiCS_DetectVG
BASiCS_DetectVG	BASiCS_DetectVG
BASiCS_DiagHist	BASiCS_DiagHist
BASiCS_diagHist	BASiCS_DiagHist
BASiCS_DiagPlot	BASiCS_DiagPlot
BASiCS_diagPlot	BASiCS_DiagPlot
BASiCS_Draw	BASiCS_Draw
BASiCS_D_TestDE	BASiCS-defunct
BASiCS_EffectiveSize	BASiCS_EffectiveSize
BASiCS_effectiveSize	BASiCS_EffectiveSize
BASiCS_Filter	BASiCS_Filter
BASiCS_LoadChain	BASiCS_LoadChain
BASiCS_MCMC	BASiCS_MCMC
BASiCS_PlotDE	BASiCS_PlotDE
BASiCS_PlotDE,BASiCS_ResultDE-method	BASiCS_PlotDE
BASiCS_PlotDE,BASiCS_ResultsDE-method	BASiCS_PlotDE
BASiCS_PlotDE,missing-method	BASiCS_PlotDE
BASiCS_PlotOffset	BASiCS_PlotOffset
BASiCS_PlotVG	BASiCS_PlotVG
BASiCS_PriorParam	BASiCS_PriorParam
BASiCS_Result	BASiCS_Result
BASiCS_Result-class	BASiCS_Result
BASiCS_ResultDE	BASiCS_ResultDE
BASiCS_ResultDE-class	BASiCS_ResultDE
BASiCS_ResultsDE	BASiCS_ResultsDE
BASiCS_ResultsDE-class	BASiCS_ResultsDE
BASiCS_ResultVG	BASiCS_ResultVG
BASiCS_ResultVG-class	BASiCS_ResultVG
BASiCS_ShowFit	BASiCS_ShowFit
BASiCS_showFit	BASiCS_ShowFit
BASiCS_Sim	BASiCS_Sim
BASiCS_Summary	BASiCS_Summary
BASiCS_Summary-class	BASiCS_Summary
BASiCS_Summary-methods	BASiCS_Summary-methods
BASiCS_TestDE	BASiCS_TestDE
BASiCS_VarianceDecomp	BASiCS_VarianceDecomp
BASiCS_VarThresholdSearchHVG	BASiCS_VarThresholdSearchHVG_LVG
BASiCS_VarThresholdSearchHVG_LVG	BASiCS_VarThresholdSearchHVG_LVG
BASiCS_VarThresholdSearchLVG	BASiCS_VarThresholdSearchHVG_LVG
BASiCS_VarThresholdSearchVG	BASiCS_VarThresholdSearchHVG_LVG
ChainRNA	ChainRNA
ChainRNAReg	ChainRNAReg
ChainSC	ChainSC
ChainSCReg	ChainSCReg
dim	dim-BASiCS_Chain-method
dim,BASiCS_Chain-method	dim-BASiCS_Chain-method
dimnames	dimnames-BASiCS_Chain-method
dimnames,BASiCS_Chain-method	dimnames-BASiCS_Chain-method
displayChainBASiCS	displayChainBASiCS-BASiCS_Chain-method
displayChainBASiCS,BASiCS_Chain-method	displayChainBASiCS-BASiCS_Chain-method
displayChainBASiCS-BASiCS_Chain-method	displayChainBASiCS-BASiCS_Chain-method
displaySummaryBASiCS	displaySummaryBASiCS-BASiCS_Summary-method
displaySummaryBASiCS,BASiCS_Summary-method	displaySummaryBASiCS-BASiCS_Summary-method
displaySummaryBASiCS-BASiCS_Summary-method	displaySummaryBASiCS-BASiCS_Summary-method
format,BASiCS_ResultDE-method	format-methods
format,BASiCS_ResultsDE-method	format-methods
format,BASiCS_ResultVG-method	format-methods
makeExampleBASiCS_Data	makeExampleBASiCS_Data
newBASiCS_Chain	newBASiCS_Chain
newBASiCS_Data	newBASiCS_Data
plot,BASiCS_Chain,ANY-method	plot-BASiCS_Chain-method
plot,BASiCS_Chain-method	plot-BASiCS_Chain-method
plot,BASiCS_Summary,ANY-method	plot-BASiCS_Summary-method
plot,BASiCS_Summary-method,	plot-BASiCS_Summary-method
plot-BASiCS_Chain-method	plot-BASiCS_Chain-method
plot-BASiCS_Summary-method	plot-BASiCS_Summary-method
rowData,BASiCS_ResultsDE-method	rowData
rowData,BASiCS_ResultVG-method	rowData
rowData<-,BASiCS_ResultsDE-method	rowData
rowData<-,BASiCS_ResultVG-method	rowData
show,BASiCS_Chain-method	BASiCS_Chain-methods
show,BASiCS_ResultDE-method	show-BASiCS_ResultDE-method
show,BASiCS_ResultsDE-method	show-BASiCS_ResultsDE-method
show,BASiCS_ResultVG-method	show-BASiCS_ResultVG-method
show,BASiCS_Summary-method	BASiCS_Summary-methods
subset	subset-BASiCS_Chain-method
subset,BASiCS_Chain-method	subset-BASiCS_Chain-method
Summary	Summary-BASiCS_Chain-method
Summary,BASiCS_Chain-method	Summary-BASiCS_Chain-method
updateObject,BASiCS_Chain-method	BASiCS_Chain-methods
[,BASiCS_Result,ANY,ANY,ANY-method	subset-methods
[,BASiCS_ResultsDE,ANY,ANY,ANY-method	subset-methods
[[,BASiCS_ResultsDE,ANY,ANY-method	subset-methods
