# Generate QC Reports For Alevin Output

## Documentation for package ‘alevinQC’ version 1.16.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

alevinFryQCReport | Generate alevin/alevin-fry summary report
alevinFryQCShiny | Generate alevin/alevin-fry summary shiny app
alevinQC-pkg | alevinQC
alevinQCReport | Generate alevin/alevin-fry summary report
alevinQCShiny | Generate alevin/alevin-fry summary shiny app
checkAlevinFryInputFiles | Check that all required input files are available for alevin-fry
checkAlevinInputFiles | Check that all required input files are available
plotAlevinBarcodeCollapse | Summary plot of cell barcode collapsing
plotAlevinHistogram | Histogram of selected summary statistic
plotAlevinKneeNbrGenes | Knee plot of the number of detected genes per cell
plotAlevinKneeRaw | Knee plot of raw cell barcode frequencies
plotAlevinQuant | Panel of plots with quantification summary statistics
plotAlevinQuantPairs | Pairs plot with quantification summary statistics
qcReport | Generate alevin/alevin-fry summary report
qcShiny | Generate alevin/alevin-fry summary shiny app
readAlevinFryQC | Read alevin-fry data required to generate summary report
readAlevinQC | Read alevin data required to generate summary report