# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-adacgh2, last modified Sun Mar 28 20:41:59 2021
# ------------------------------------------------

package:
  name: bioconductor-adacgh2
  version: 2.30.0
source:
  md5: 81b47493f2488d1013ff401d411d7053
  url:
    - https://bioarchive.galaxyproject.org/ADaCGH2_2.30.0.tar.gz
    - https://bioconductor.org/packages/3.12/bioc/src/contrib/ADaCGH2_2.30.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-adacgh2/bioconductor-adacgh2_2.30.0_src_all.tar.gz
build:
  number: '1'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r40h68a2ddb_1
requirements:
  build:
    - cctools_osx-64 949.0.1 h6407bdd_20
    - clang 11.1.0 h694c41f_0
    - clang-11 11.1.0 default_he082bbe_0
    - clang_osx-64 11.1.0 hb91bd55_0
    - clangxx 11.1.0 default_he082bbe_0
    - compiler-rt 11.1.0 h654b07c_0
    - compiler-rt_osx-64 11.1.0 h8c5fa43_0
    - ld64_osx-64 530 he8994da_20
    - ldid 2.1.2 h7660a38_2
    - libclang-cpp11.1 11.1.0 default_he082bbe_0
    - libcxx 11.1.0 habf9029_0
    - libllvm11 11.1.0 hd011deb_0
    - llvm-tools 11.1.0 hd011deb_0
    - make 4.3 h22f3db7_1
    - tapi 1100.0.11 h9ce4665_0
    - zlib 1.2.11 h7795811_1010
  host:
    - _r-mutex 1.0.1 anacondar_1
    - bioconductor-acgh 1.68.0 r40h832b226_1
    - bioconductor-affy 1.68.0 r40h68a2ddb_1
    - bioconductor-affyio 1.60.0 r40h68a2ddb_1
    - bioconductor-annotate 1.68.0 r40_0
    - bioconductor-annotationdbi 1.52.0 r40_0
    - bioconductor-biobase 2.50.0 r40h68a2ddb_1
    - bioconductor-biocgenerics 0.36.0 r40hdfd78af_1
    - bioconductor-dnacopy 1.64.0 r40hab9ba07_1
    - bioconductor-genefilter 1.72.1 r40hcf7da7f_0
    - bioconductor-glad 2.54.0 r40h6d38117_1
    - bioconductor-iranges 2.24.1 r40h68a2ddb_0
    - bioconductor-limma 3.46.0 r40h68a2ddb_1
    - bioconductor-multtest 2.46.0 r40h68a2ddb_1
    - bioconductor-preprocesscore 1.52.1 r40h68a2ddb_0
    - bioconductor-s4vectors 0.28.1 r40h68a2ddb_0
    - bioconductor-snapcgh 1.60.0 r40h68a2ddb_1
    - bioconductor-tilingarray 1.68.0 r40h68a2ddb_1
    - bioconductor-vsn 3.58.0 r40h68a2ddb_1
    - bioconductor-zlibbioc 1.36.0 r40h68a2ddb_1
    - bwidget 1.9.14 h694c41f_0
    - bzip2 1.0.8 hc929b4f_4
    - c-ares 1.17.1 h0d85af4_1
    - ca-certificates 2020.12.5 h033912b_0
    - cairo 1.16.0 he43a7df_1008
    - cctools_osx-64 949.0.1 h6407bdd_20
    - clang 11.1.0 h694c41f_0
    - clang-11 11.1.0 default_he082bbe_0
    - clang_osx-64 11.1.0 hb91bd55_0
    - clangxx 11.1.0 default_he082bbe_0
    - clangxx_osx-64 11.1.0 h7e1b574_0
    - compiler-rt 11.1.0 h654b07c_0
    - compiler-rt_osx-64 11.1.0 h8c5fa43_0
    - curl 7.75.0 h06286d4_0
    - fontconfig 2.13.1 hd23ceaa_1004
    - freetype 2.10.4 h4cff582_1
    - fribidi 1.0.10 hbcb3906_0
    - gettext 0.19.8.1 h7937167_1005
    - gfortran_impl_osx-64 9.3.0 h9cc0e5e_21
    - gfortran_osx-64 9.3.0 h18f7dce_14
    - gmp 6.2.1 h2e338ed_0
    - graphite2 1.3.13 h2e338ed_1001
    - gsl 2.6 h71c5fe9_2
    - harfbuzz 2.8.0 h159f659_1
    - icu 68.1 h74dc148_0
    - isl 0.22.1 hb1e8313_2
    - jpeg 9d hbcb3906_0
    - krb5 1.17.2 h60d9502_0
    - ld64_osx-64 530 he8994da_20
    - ldid 2.1.2 h7660a38_2
    - libblas 3.8.0 11_h508aa58_netlib
    - libcblas 3.8.0 11_h508aa58_netlib
    - libclang-cpp11.1 11.1.0 default_he082bbe_0
    - libcurl 7.75.0 h8ef9fac_0
    - libcxx 11.1.0 habf9029_0
    - libedit 3.1.20191231 h0678c8f_2
    - libev 4.33 haf1e3a3_1
    - libffi 3.3 h046ec9c_2
    - libgfortran 5.0.0 9_3_0_h6c81a4c_21
    - libgfortran-devel_osx-64 9.3.0 h6c81a4c_21
    - libgfortran5 9.3.0 h6c81a4c_21
    - libglib 2.68.0 hd556434_2
    - libiconv 1.16 haf1e3a3_0
    - liblapack 3.8.0 11_h508aa58_netlib
    - libllvm11 11.1.0 hd011deb_0
    - libnghttp2 1.43.0 h07e645a_0
    - libpng 1.6.37 h7cec526_2
    - libssh2 1.9.0 h52ee1ee_6
    - libtiff 4.2.0 h355d032_0
    - libwebp-base 1.2.0 h0d85af4_2
    - libxml2 2.9.10 h802ca4f_3
    - llvm-openmp 11.1.0 hda6cdc1_0
    - llvm-tools 11.1.0 hd011deb_0
    - lz4-c 1.9.3 h046ec9c_0
    - make 4.3 h22f3db7_1
    - mpc 1.1.0 ha57cd0f_1009
    - mpfr 4.0.2 h72d8aaf_1
    - ncurses 6.2 h2e338ed_4
    - openssl 1.1.1k h0d85af4_0
    - pango 1.48.4 ha05cd14_0
    - pcre 8.44 hb1e8313_0
    - pcre2 10.36 h5cf9962_1
    - pixman 0.40.0 hbcb3906_0
    - r-askpass 1.1 r40h17f1fa6_2
    - r-assertthat 0.2.1 r40h6115d3f_2
    - r-aws 2.5_1 r40h1a6e9bf_0
    - r-awsmethods 1.1_1 r40h17f1fa6_2
    - r-backports 1.2.1 r40h066c5db_0
    - r-base 4.0.3 hb6e1b8c_8
    - r-biocmanager 1.30.12 r40hc72bb7e_0
    - r-bit 4.0.4 r40h800e0f2_0
    - r-bit64 4.0.5 r40h800e0f2_0
    - r-blob 1.2.1 r40h6115d3f_1
    - r-brio 1.1.1 r40h066c5db_0
    - r-cachem 1.0.4 r40hf6ff476_0
    - r-callr 3.6.0 r40hc72bb7e_0
    - r-cli 2.3.1 r40hc72bb7e_0
    - r-cluster 2.1.1 r40h59bb11e_0
    - r-colorspace 2.0_0 r40h6b199c2_0
    - r-crayon 1.4.1 r40hc72bb7e_0
    - r-curl 4.3 r40h28b5c78_1
    - r-dbi 1.1.1 r40hc72bb7e_0
    - r-desc 1.3.0 r40hc72bb7e_0
    - r-diffobj 0.3.3 r40h066c5db_0
    - r-digest 0.6.27 r40h342fd00_0
    - r-ellipsis 0.3.1 r40h17f1fa6_0
    - r-evaluate 0.14 r40h6115d3f_2
    - r-fansi 0.4.2 r40h066c5db_0
    - r-farver 2.1.0 r40h9951f98_0
    - r-fastmap 1.1.0 r40h815b84a_0
    - r-fastmatch 1.1_0 r40h17f1fa6_1005
    - r-ff 4.0.4 r40hb1e8313_0
    - r-ffbase 0.13.3 r40h28b5c78_0
    - r-ggplot2 3.3.3 r40hc72bb7e_0
    - r-glue 1.4.2 r40h066c5db_0
    - r-gsl 2.1_6 r40h2160e0c_3
    - r-gtable 0.3.0 r40h6115d3f_3
    - r-httr 1.4.2 r40h6115d3f_0
    - r-isoband 0.2.4 r40h9951f98_0
    - r-jsonlite 1.7.2 r40h066c5db_0
    - r-labeling 0.4.2 r40h142f84f_0
    - r-lattice 0.20_41 r40h066c5db_3
    - r-lifecycle 1.0.0 r40hc72bb7e_0
    - r-magrittr 2.0.1 r40h066c5db_1
    - r-mass 7.3_53.1 r40hf6ff476_0
    - r-matrix 1.3_2 r40h9a4b173_0
    - r-memoise 2.0.0 r40hc72bb7e_0
    - r-mgcv 1.8_34 r40h9a4b173_0
    - r-mime 0.10 r40hf6ff476_0
    - r-munsell 0.5.0 r40h6115d3f_1003
    - r-nlme 3.1_152 r40h59bb11e_0
    - r-openssl 1.4.3 r40ha713f70_0
    - r-pillar 1.5.1 r40hc72bb7e_0
    - r-pixmap 0.4_12 r40hc72bb7e_0
    - r-pkgbuild 1.2.0 r40hc72bb7e_0
    - r-pkgconfig 2.0.3 r40h6115d3f_1
    - r-pkgload 1.2.0 r40h4efb63e_0
    - r-plogr 0.2.0 r40h6115d3f_1003
    - r-praise 1.0.0 r40h6115d3f_1004
    - r-prettyunits 1.1.1 r40h6115d3f_1
    - r-processx 3.5.0 r40h28b5c78_0
    - r-ps 1.6.0 r40h28b5c78_0
    - r-r6 2.5.0 r40hc72bb7e_0
    - r-rcolorbrewer 1.1_2 r40h6115d3f_1003
    - r-rcpp 1.0.6 r40h815b84a_0
    - r-rematch2 2.1.2 r40h6115d3f_1
    - r-rlang 0.4.10 r40h066c5db_0
    - r-rprojroot 2.0.2 r40hc72bb7e_0
    - r-rsqlite 2.2.5 r40h9951f98_0
    - r-rstudioapi 0.13 r40hc72bb7e_0
    - r-sandwich 3.0_0 r40h142f84f_0
    - r-scales 1.1.1 r40h6115d3f_0
    - r-strucchange 1.5_2 r40h17f1fa6_1
    - r-survival 3.2_10 r40h28b5c78_0
    - r-sys 3.4 r40h800e0f2_0
    - r-testthat 3.0.2 r40h4efb63e_0
    - r-tibble 3.1.0 r40h28b5c78_1
    - r-utf8 1.2.1 r40h28b5c78_0
    - r-vctrs 0.3.6 r40h066c5db_0
    - r-viridislite 0.3.0 r40h6115d3f_1003
    - r-waldo 0.2.5 r40hc72bb7e_0
    - r-waveslim 1.8.2 r40h43cf36c_2
    - r-withr 2.4.1 r40hc72bb7e_0
    - r-xml 3.99_0.6 r40h28b5c78_0
    - r-xtable 1.8_4 r40h6115d3f_3
    - r-zeallot 0.1.0 r40h6115d3f_1002
    - r-zoo 1.8_9 r40h28b5c78_0
    - readline 8.1 h05e3726_0
    - tapi 1100.0.11 h9ce4665_0
    - tk 8.6.10 h0419947_1
    - tktable 2.10 h49f0cf7_3
    - xz 5.2.5 haf1e3a3_1
    - zlib 1.2.11 h7795811_1010
    - zstd 1.4.9 h582d3a0_0
  run:
    - bioconductor-acgh >=1.68.0,<1.69.0
    - bioconductor-dnacopy >=1.64.0,<1.65.0
    - bioconductor-glad >=2.54.0,<2.55.0
    - bioconductor-snapcgh >=1.60.0,<1.61.0
    - bioconductor-tilingarray >=1.68.0,<1.69.0
    - libblas >=3.8.0,<4.0a0
    - liblapack >=3.8.0,<4.0a0
    - r-base >=4.0,<4.1.0a0
    - r-bit
    - r-cluster
    - r-ff
    - r-ffbase
    - r-waveslim
test:
  commands:
    - $R -e "library('ADaCGH2')"
about:
  description: Analysis and plotting of array CGH data. Allows usage of Circular Binary
    Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as
    in Ben-Yaacov and Eldar), HMM, BioHMM, GLAD, CGHseg. Most computations are parallelized
    (either via forking or with clusters, including MPI and sockets clusters) and
    use ff for storing data.
  home: https://bioconductor.org/packages/3.12/bioc/html/ADaCGH2.html
  license: GPL (>= 3)
  license_file: /Users/runner/bioconda/conda-bld/bioconductor-adacgh2_1616975152991/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_/lib/R/share/licenses/GPL-3
  summary: Analysis of big data from aCGH experiments using parallel computing and
    ff objects
extra:
  copy_test_source_files: true
  final: true
