Package: ABAEnrichment
Type: Package
Title: Gene expression enrichment in human brain regions
Version: 1.10.0
Date: 2018-04-11
Author: Steffi Grote
Maintainer: Steffi Grote <steffi_grote@eva.mpg.de>
Description: The package ABAEnrichment is designed to test for
        enrichment of user defined candidate genes in the set of
        expressed genes in different human brain regions. The core
        function 'aba_enrich' integrates the expression of the
        candidate gene set (averaged across donors) and the structural
        information of the brain using an ontology, both provided by
        the Allen Brain Atlas project. 'aba_enrich' interfaces the
        ontology enrichment software FUNC to perform the statistical
        analyses. Additional functions provided in this package like
        'get_expression' and 'plot_expression' facilitate exploring the
        expression data. From version 1.3.5 onwards genomic regions 
        can be provided as input, too; and from version 1.5.9 onwards
        the function 'get_annotated_genes' offers an easy way to obtain
        annotations of genes to enriched or user-defined brain regions.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.5), gplots (>= 2.14.2), gtools (>= 3.5.0),
        ABAData (>= 0.99.2), data.table (>= 1.10.4), grDevices, stats,
        utils
Depends: R (>= 3.4)
LinkingTo: Rcpp
Suggests: BiocStyle, knitr, testthat
VignetteBuilder: knitr
biocViews: GeneSetEnrichment, GeneExpression
NeedsCompilation: yes
Packaged: 2018-05-01 00:34:44 UTC; biocbuild
Built: R 3.4.1; x86_64-apple-darwin14.5.0; 2018-10-25 23:10:22 UTC; unix
