Filter Report

[_INPUT-FILE-NAME_]
[_REPORT-DATE_]

| Number of Reads | File Size | File Location
--- | --- | --- | ---
Raw FASTQ | [_RAW-READ-CNT_] | [_RAW-FILE-SIZE_] MB | [_RAW-FILE-LOCATION_]
Filtered FASTQ | [_FILTERED-READ-CNT_] | [_FILTERED-FILE-SIZE_] MB | [_FILTERED-FILE-LOCATION_]
Filtered % | [_REMOVED-READ-PCT_]% | - | -

## Filtering Stats

Metric | Read Count | Base Count
--- | --- | ---
Input | [_RAW-READ-CNT_] | [_RAW-BASE-CNT_]
Remaining | [_FILTERED-READ-CNT_] | [_FILTERED-BASE-CNT_]
Percentage Removed | [_REMOVED-READ-PCT_] | [_REMOVED-BASE-PCT_]

- Filter log: filter.log (29.7 KB)
- Filter Text Report: filter.txt (878.0 bytes)
- Filter Metadata Json File: metadata.json (1.5 KB)

Metric | Percent | Read Count
--- | --- | ---
Low Quality Removed | [_LOW-QUAL-REMOVED-PCT_] | [_LOW-QUAL-REMOVED-READ-CNT_]
Artifact Removed | [_ARTI-REMOVED-PCT_] | [_ARTI-REMOVED-READ-CNT_]
Ribosomal RNA Removed | [_RRNA-REMOVED-PCT_] | [_RRNA-REMOVED-READ-CNT_]
Microbial Removed | [_MICROBE-REMOVED-PCT_] | [_MICROBE-REMOVED-READ-CNT_]
Human Filtered | [_HUMAN-REMOVED-PCT_] | [_HUMAN-REMOVED-READ-CNT_]
Dog Filtered | [_DOG-REMOVED-PCT_] | [_DOG-REMOVED-READ-CNT_]
Cat Filtered | [_CAT-REMOVED-PCT_] | [_CAT-REMOVED-READ-CNT_]
Mouse Filtered | [_MOUSE-REMOVED-PCT_] | [_MOUSE-REMOVED-READ-CNT_]

[_FILTERED-READ-QC_]