CONTRIBUTING.md
LICENSE.txt
MANIFEST.in
README-Release.md
README.md
download_databases.py
requirements.txt
run_antismash.py
setup.py
test_activeSiteFinder.py
antismash/__init__.py
antismash/utils.py
antismash.egg-info/PKG-INFO
antismash.egg-info/SOURCES.txt
antismash.egg-info/dependency_links.txt
antismash.egg-info/entry_points.txt
antismash.egg-info/top_level.txt
antismash/config/__init__.py
antismash/config/default.cfg
antismash/generic_modules/__init__.py
antismash/generic_modules/active_site_finder/__init__.py
antismash/generic_modules/active_site_finder/config/SignatureResources.dtd
antismash/generic_modules/active_site_finder/config/SignatureResources.xml
antismash/generic_modules/active_site_finder/hmm/Condensation.hmm2
antismash/generic_modules/active_site_finder/hmm/KStypes.hmm3
antismash/generic_modules/active_site_finder/hmm/PKSI-ACP.hmm2
antismash/generic_modules/active_site_finder/hmm/PKSI-AT-muscle.hmm2
antismash/generic_modules/active_site_finder/hmm/PKSI-AT-t_coffee.hmm2
antismash/generic_modules/active_site_finder/hmm/PKSI-AT.hmm2
antismash/generic_modules/active_site_finder/hmm/PKSI-AT_malonylCoA.hmm2
antismash/generic_modules/active_site_finder/hmm/PKSI-AT_methylmalonylCoA.hmm2
antismash/generic_modules/active_site_finder/hmm/PKSI-DH.hmm2
antismash/generic_modules/active_site_finder/hmm/PKSI-DH_ATless.hmm2
antismash/generic_modules/active_site_finder/hmm/PKSI-ER.hmm2
antismash/generic_modules/active_site_finder/hmm/PKSI-KR.hmm2
antismash/generic_modules/active_site_finder/hmm/PKSI-KS.hmm2
antismash/generic_modules/active_site_finder/hmm/PKSI-KS_C.hmm2
antismash/generic_modules/active_site_finder/hmm/PKSI-KS_N.hmm2
antismash/generic_modules/active_site_finder/hmm/PKSI-MT.hmm2
antismash/generic_modules/active_site_finder/hmm/Rausch2007-CDoms.hmm
antismash/generic_modules/active_site_finder/hmm/Rausch2007Condensation.hmm
antismash/generic_modules/active_site_finder/hmm/Thioesterase.hmm2
antismash/generic_modules/active_site_finder/hmm/aa-activating.aroundLys.hmm2
antismash/generic_modules/active_site_finder/hmm/p450.hmm3
antismash/generic_modules/cassis/__init__.py
antismash/generic_modules/cassis/promoterregions.png
antismash/generic_modules/clusterblast/__init__.py
antismash/generic_modules/clusterblast/clusterblast.py
antismash/generic_modules/clusterblast/data_loading.py
antismash/generic_modules/clusterfinder/NewTS_all_B_index.pkl
antismash/generic_modules/clusterfinder/NewTS_all_B_reduced_6filter.pkl
antismash/generic_modules/clusterfinder/SP_arr.pkl
antismash/generic_modules/clusterfinder/TP_arr_A.pkl
antismash/generic_modules/clusterfinder/__init__.py
antismash/generic_modules/clusterfinder/cluster_predict.py
antismash/generic_modules/clusterfinder/hmms.py
antismash/generic_modules/fullhmmer/__init__.py
antismash/generic_modules/fullhmmer/name2pfamid.py
antismash/generic_modules/fullhmmer/rebuild_pairings.py
antismash/generic_modules/genefinding/__init__.py
antismash/generic_modules/genefinding/all_orfs.py
antismash/generic_modules/genefinding/run_glimmer.py
antismash/generic_modules/genefinding/run_glimmerhmm.py
antismash/generic_modules/genefinding/run_prodigal.py
antismash/generic_modules/genefinding/train_crypto/temp.fasta
antismash/generic_modules/genefinding/train_crypto/train_0_100.cfg
antismash/generic_modules/gff_parser/__init__.py
antismash/generic_modules/hmm_detection/A-OX.hmm
antismash/generic_modules/hmm_detection/AMP-binding.hmm
antismash/generic_modules/hmm_detection/APE_KS1.hmm
antismash/generic_modules/hmm_detection/APE_KS2.hmm
antismash/generic_modules/hmm_detection/ATd.hmm
antismash/generic_modules/hmm_detection/AfsA.hmm
antismash/generic_modules/hmm_detection/Antimicrobial14.hmm
antismash/generic_modules/hmm_detection/Antimicrobial17.hmm
antismash/generic_modules/hmm_detection/Antimicrobial18.hmm
antismash/generic_modules/hmm_detection/Autoind_synth.hmm
antismash/generic_modules/hmm_detection/BLS.hmm
antismash/generic_modules/hmm_detection/BacteriocIIc_cy.hmm
antismash/generic_modules/hmm_detection/Bacteriocin_II.hmm
antismash/generic_modules/hmm_detection/Bacteriocin_IIc.hmm
antismash/generic_modules/hmm_detection/Bacteriocin_IId.hmm
antismash/generic_modules/hmm_detection/Bacteriocin_IIi.hmm
antismash/generic_modules/hmm_detection/CAS.hmm
antismash/generic_modules/hmm_detection/CaiA.hmm
antismash/generic_modules/hmm_detection/Chal_sti_synt_C.hmm
antismash/generic_modules/hmm_detection/Chal_sti_synt_N.hmm
antismash/generic_modules/hmm_detection/Cloacin.hmm
antismash/generic_modules/hmm_detection/Condensation.hmm
antismash/generic_modules/hmm_detection/DOIS.hmm
antismash/generic_modules/hmm_detection/DUF1205.hmm
antismash/generic_modules/hmm_detection/DUF692.hmm
antismash/generic_modules/hmm_detection/DarB.hmm
antismash/generic_modules/hmm_detection/FabF.hmm
antismash/generic_modules/hmm_detection/Gallidermin.hmm
antismash/generic_modules/hmm_detection/Glyco_transf_28.hmm
antismash/generic_modules/hmm_detection/Glycos_transf_1.hmm
antismash/generic_modules/hmm_detection/Glycos_transf_2.hmm
antismash/generic_modules/hmm_detection/IucA_IucC.hmm
antismash/generic_modules/hmm_detection/LANC_like.hmm
antismash/generic_modules/hmm_detection/LE-DUF.hmm
antismash/generic_modules/hmm_detection/LE-LAC481.hmm
antismash/generic_modules/hmm_detection/LE-LanBC.hmm
antismash/generic_modules/hmm_detection/LE-MER+2PEP.hmm
antismash/generic_modules/hmm_detection/L_biotic_typeA.hmm
antismash/generic_modules/hmm_detection/Lactococcin.hmm
antismash/generic_modules/hmm_detection/Lactococcin_972.hmm
antismash/generic_modules/hmm_detection/Lant_dehyd_C.hmm
antismash/generic_modules/hmm_detection/Lant_dehyd_N.hmm
antismash/generic_modules/hmm_detection/LcnG-beta.hmm
antismash/generic_modules/hmm_detection/Linocin_M18.hmm
antismash/generic_modules/hmm_detection/LipM.hmm
antismash/generic_modules/hmm_detection/LipU.hmm
antismash/generic_modules/hmm_detection/LipV.hmm
antismash/generic_modules/hmm_detection/LmbU.hmm
antismash/generic_modules/hmm_detection/Lycopene_cycl.hmm
antismash/generic_modules/hmm_detection/MA-2PEPA.hmm
antismash/generic_modules/hmm_detection/MA-2PEPB.hmm
antismash/generic_modules/hmm_detection/MA-DUF.hmm
antismash/generic_modules/hmm_detection/MA-EPI.hmm
antismash/generic_modules/hmm_detection/MA-LAC481.hmm
antismash/generic_modules/hmm_detection/MA-NIS+EPI.hmm
antismash/generic_modules/hmm_detection/MA-NIS.hmm
antismash/generic_modules/hmm_detection/MGT.hmm
antismash/generic_modules/hmm_detection/MGT2.hmm
antismash/generic_modules/hmm_detection/MoeO5.hmm
antismash/generic_modules/hmm_detection/NAD_binding_4.hmm
antismash/generic_modules/hmm_detection/NapT7.hmm
antismash/generic_modules/hmm_detection/Neocarzinostat.hmm
antismash/generic_modules/hmm_detection/PF00067.hmm
antismash/generic_modules/hmm_detection/PF00069.hmm
antismash/generic_modules/hmm_detection/PF00082.hmm
antismash/generic_modules/hmm_detection/PF00106.hmm
antismash/generic_modules/hmm_detection/PF00128.hmm
antismash/generic_modules/hmm_detection/PF00326.hmm
antismash/generic_modules/hmm_detection/PF00561.hmm
antismash/generic_modules/hmm_detection/PF00675.hmm
antismash/generic_modules/hmm_detection/PF00733.hmm
antismash/generic_modules/hmm_detection/PF00881.hmm
antismash/generic_modules/hmm_detection/PF00899.hmm
antismash/generic_modules/hmm_detection/PF00908.hmm
antismash/generic_modules/hmm_detection/PF00953.hmm
antismash/generic_modules/hmm_detection/PF01041.hmm
antismash/generic_modules/hmm_detection/PF01050.hmm
antismash/generic_modules/hmm_detection/PF01075.hmm
antismash/generic_modules/hmm_detection/PF01501.hmm
antismash/generic_modules/hmm_detection/PF01943.hmm
antismash/generic_modules/hmm_detection/PF02163.hmm
antismash/generic_modules/hmm_detection/PF02350.hmm
antismash/generic_modules/hmm_detection/PF02397.hmm
antismash/generic_modules/hmm_detection/PF02441.hmm
antismash/generic_modules/hmm_detection/PF02517.hmm
antismash/generic_modules/hmm_detection/PF02563.hmm
antismash/generic_modules/hmm_detection/PF02585.hmm
antismash/generic_modules/hmm_detection/PF02719.hmm
antismash/generic_modules/hmm_detection/PF02806.hmm
antismash/generic_modules/hmm_detection/PF02922.hmm
antismash/generic_modules/hmm_detection/PF03412.hmm
antismash/generic_modules/hmm_detection/PF03572.hmm
antismash/generic_modules/hmm_detection/PF04055.hmm
antismash/generic_modules/hmm_detection/PF04101.hmm
antismash/generic_modules/hmm_detection/PF04321.hmm
antismash/generic_modules/hmm_detection/PF04820.hmm
antismash/generic_modules/hmm_detection/PF04932.hmm
antismash/generic_modules/hmm_detection/PF05159.hmm
antismash/generic_modules/hmm_detection/PF05193.hmm
antismash/generic_modules/hmm_detection/PF05402.hmm
antismash/generic_modules/hmm_detection/PF06968.hmm
antismash/generic_modules/hmm_detection/PF07366.hmm
antismash/generic_modules/hmm_detection/PF08437.hmm
antismash/generic_modules/hmm_detection/PF12697.hmm
antismash/generic_modules/hmm_detection/PF13186.hmm
antismash/generic_modules/hmm_detection/PF13353.hmm
antismash/generic_modules/hmm_detection/PF13471.hmm
antismash/generic_modules/hmm_detection/PF13561.hmm
antismash/generic_modules/hmm_detection/PF13575.hmm
antismash/generic_modules/hmm_detection/PF14028.hmm
antismash/generic_modules/hmm_detection/PKS_AT.hmm
antismash/generic_modules/hmm_detection/PKS_KS.hmm
antismash/generic_modules/hmm_detection/PP-binding.hmm
antismash/generic_modules/hmm_detection/PUFA_KS.hmm
antismash/generic_modules/hmm_detection/PoyD.hmm
antismash/generic_modules/hmm_detection/Subtilosin_A.hmm
antismash/generic_modules/hmm_detection/TIGR01193.hmm
antismash/generic_modules/hmm_detection/TIGR03601.hmm
antismash/generic_modules/hmm_detection/TIGR03602.hmm
antismash/generic_modules/hmm_detection/TIGR03603.hmm
antismash/generic_modules/hmm_detection/TIGR03604.hmm
antismash/generic_modules/hmm_detection/TIGR03605.hmm
antismash/generic_modules/hmm_detection/TIGR03651.hmm
antismash/generic_modules/hmm_detection/TIGR03678.hmm
antismash/generic_modules/hmm_detection/TIGR03693.hmm
antismash/generic_modules/hmm_detection/TIGR03731.hmm
antismash/generic_modules/hmm_detection/TIGR03793.hmm
antismash/generic_modules/hmm_detection/TIGR03795.hmm
antismash/generic_modules/hmm_detection/TIGR03798.hmm
antismash/generic_modules/hmm_detection/TIGR03882.hmm
antismash/generic_modules/hmm_detection/TIGR03973.hmm
antismash/generic_modules/hmm_detection/TIGR03975.hmm
antismash/generic_modules/hmm_detection/TIGR04363.hmm
antismash/generic_modules/hmm_detection/TIGR04404.hmm
antismash/generic_modules/hmm_detection/Terpene_synth.hmm
antismash/generic_modules/hmm_detection/Terpene_synth_C.hmm
antismash/generic_modules/hmm_detection/ToyB.hmm
antismash/generic_modules/hmm_detection/TunD.hmm
antismash/generic_modules/hmm_detection/UbiA.hmm
antismash/generic_modules/hmm_detection/YcaO.hmm
antismash/generic_modules/hmm_detection/__init__.py
antismash/generic_modules/hmm_detection/bacilysin.hmm
antismash/generic_modules/hmm_detection/bcpB.hmm
antismash/generic_modules/hmm_detection/botH.hmm
antismash/generic_modules/hmm_detection/botH_seed.hmm
antismash/generic_modules/hmm_detection/bt1fas.hmm
antismash/generic_modules/hmm_detection/cluster_rules.txt
antismash/generic_modules/hmm_detection/cyanobactin_synth.hmm
antismash/generic_modules/hmm_detection/cycdipepsynth.hmm
antismash/generic_modules/hmm_detection/cypI.hmm
antismash/generic_modules/hmm_detection/cypemycin.hmm
antismash/generic_modules/hmm_detection/dmat.hmm
antismash/generic_modules/hmm_detection/ectoine_synt.hmm
antismash/generic_modules/hmm_detection/ene_KS.hmm
antismash/generic_modules/hmm_detection/fabH.hmm
antismash/generic_modules/hmm_detection/filterhmmdetails.txt
antismash/generic_modules/hmm_detection/fom1.hmm
antismash/generic_modules/hmm_detection/frbD.hmm
antismash/generic_modules/hmm_detection/ft1fas.hmm
antismash/generic_modules/hmm_detection/fung_ggpps.hmm
antismash/generic_modules/hmm_detection/fung_ggpps2.hmm
antismash/generic_modules/hmm_detection/glycocin.hmm
antismash/generic_modules/hmm_detection/goadsporin_like.hmm
antismash/generic_modules/hmm_detection/hglD.hmm
antismash/generic_modules/hmm_detection/hglE.hmm
antismash/generic_modules/hmm_detection/hmmdetails.txt
antismash/generic_modules/hmm_detection/hyb_KS.hmm
antismash/generic_modules/hmm_detection/indole_PTase.hmm
antismash/generic_modules/hmm_detection/indsynth.hmm
antismash/generic_modules/hmm_detection/itr_KS.hmm
antismash/generic_modules/hmm_detection/ksIII.hmm
antismash/generic_modules/hmm_detection/ksdomains.hmm
antismash/generic_modules/hmm_detection/ladderane.hmm
antismash/generic_modules/hmm_detection/lasso.hmm
antismash/generic_modules/hmm_detection/mcjC.hmm
antismash/generic_modules/hmm_detection/melC.hmm
antismash/generic_modules/hmm_detection/micJ25.hmm
antismash/generic_modules/hmm_detection/mitE.hmm
antismash/generic_modules/hmm_detection/mmyO.hmm
antismash/generic_modules/hmm_detection/mod_KS.hmm
antismash/generic_modules/hmm_detection/moeGT.hmm
antismash/generic_modules/hmm_detection/mvd_mst.hmm
antismash/generic_modules/hmm_detection/mvnA.hmm
antismash/generic_modules/hmm_detection/neoL_like.hmm
antismash/generic_modules/hmm_detection/nikJ.hmm
antismash/generic_modules/hmm_detection/nikO.hmm
antismash/generic_modules/hmm_detection/novH.hmm
antismash/generic_modules/hmm_detection/novI.hmm
antismash/generic_modules/hmm_detection/novJ.hmm
antismash/generic_modules/hmm_detection/novK.hmm
antismash/generic_modules/hmm_detection/orf2_PTase.hmm
antismash/generic_modules/hmm_detection/pgm1.hmm
antismash/generic_modules/hmm_detection/pgm_amidino.hmm
antismash/generic_modules/hmm_detection/phosphonates.hmm
antismash/generic_modules/hmm_detection/phytoene_synt.hmm
antismash/generic_modules/hmm_detection/phzB.hmm
antismash/generic_modules/hmm_detection/prnB.hmm
antismash/generic_modules/hmm_detection/pur10.hmm
antismash/generic_modules/hmm_detection/pur6.hmm
antismash/generic_modules/hmm_detection/ripp.hmm
antismash/generic_modules/hmm_detection/salQ.hmm
antismash/generic_modules/hmm_detection/skfc.hmm
antismash/generic_modules/hmm_detection/spcDK_like_cou.hmm
antismash/generic_modules/hmm_detection/spcDK_like_glyc.hmm
antismash/generic_modules/hmm_detection/spcFG_like.hmm
antismash/generic_modules/hmm_detection/strH_like.hmm
antismash/generic_modules/hmm_detection/strK_like1.hmm
antismash/generic_modules/hmm_detection/strK_like2.hmm
antismash/generic_modules/hmm_detection/strep_PEQAXS.hmm
antismash/generic_modules/hmm_detection/strepbact.hmm
antismash/generic_modules/hmm_detection/sublancin.hmm
antismash/generic_modules/hmm_detection/subtilosin.hmm
antismash/generic_modules/hmm_detection/t2clf.hmm
antismash/generic_modules/hmm_detection/t2fas.hmm
antismash/generic_modules/hmm_detection/t2ks.hmm
antismash/generic_modules/hmm_detection/t2ks2.hmm
antismash/generic_modules/hmm_detection/tabtoxin.hmm
antismash/generic_modules/hmm_detection/terpene_cyclase.hmm
antismash/generic_modules/hmm_detection/thio_amide.hmm
antismash/generic_modules/hmm_detection/thiostrepton.hmm
antismash/generic_modules/hmm_detection/thuricin.hmm
antismash/generic_modules/hmm_detection/tra_KS.hmm
antismash/generic_modules/hmm_detection/trichodiene_synth.hmm
antismash/generic_modules/hmm_detection/tsrC.hmm
antismash/generic_modules/hmm_detection/valA_like.hmm
antismash/generic_modules/hmm_detection/vlmB.hmm
antismash/generic_modules/knownclusterblast/__init__.py
antismash/generic_modules/knownclusterblast/knownclusterblast.py
antismash/generic_modules/knownclusterblast/knownclusterprots.dmnd
antismash/generic_modules/knownclusterblast/knownclusterprots.fasta
antismash/generic_modules/knownclusterblast/knownclusters.txt
antismash/generic_modules/smcogs/TreeGraph.jar
antismash/generic_modules/smcogs/__init__.py
antismash/generic_modules/smcogs/smcog1000_muscle.fasta
antismash/generic_modules/smcogs/smcog1001_muscle.fasta
antismash/generic_modules/smcogs/smcog1002_muscle.fasta
antismash/generic_modules/smcogs/smcog1003_muscle.fasta
antismash/generic_modules/smcogs/smcog1004_muscle.fasta
antismash/generic_modules/smcogs/smcog1005_muscle.fasta
antismash/generic_modules/smcogs/smcog1006_muscle.fasta
antismash/generic_modules/smcogs/smcog1007_muscle.fasta
antismash/generic_modules/smcogs/smcog1008_muscle.fasta
antismash/generic_modules/smcogs/smcog1009_muscle.fasta
antismash/generic_modules/smcogs/smcog1010_muscle.fasta
antismash/generic_modules/smcogs/smcog1011_muscle.fasta
antismash/generic_modules/smcogs/smcog1012_muscle.fasta
antismash/generic_modules/smcogs/smcog1013_muscle.fasta
antismash/generic_modules/smcogs/smcog1014_muscle.fasta
antismash/generic_modules/smcogs/smcog1015_muscle.fasta
antismash/generic_modules/smcogs/smcog1016_muscle.fasta
antismash/generic_modules/smcogs/smcog1017_muscle.fasta
antismash/generic_modules/smcogs/smcog1018_muscle.fasta
antismash/generic_modules/smcogs/smcog1019_muscle.fasta
antismash/generic_modules/smcogs/smcog1020_muscle.fasta
antismash/generic_modules/smcogs/smcog1021_muscle.fasta
antismash/generic_modules/smcogs/smcog1022_muscle.fasta
antismash/generic_modules/smcogs/smcog1023_muscle.fasta
antismash/generic_modules/smcogs/smcog1024_muscle.fasta
antismash/generic_modules/smcogs/smcog1025_muscle.fasta
antismash/generic_modules/smcogs/smcog1026_muscle.fasta
antismash/generic_modules/smcogs/smcog1027_muscle.fasta
antismash/generic_modules/smcogs/smcog1028_muscle.fasta
antismash/generic_modules/smcogs/smcog1029_muscle.fasta
antismash/generic_modules/smcogs/smcog1030_muscle.fasta
antismash/generic_modules/smcogs/smcog1031_muscle.fasta
antismash/generic_modules/smcogs/smcog1032_muscle.fasta
antismash/generic_modules/smcogs/smcog1033_muscle.fasta
antismash/generic_modules/smcogs/smcog1034_muscle.fasta
antismash/generic_modules/smcogs/smcog1035_muscle.fasta
antismash/generic_modules/smcogs/smcog1036_muscle.fasta
antismash/generic_modules/smcogs/smcog1037_muscle.fasta
antismash/generic_modules/smcogs/smcog1038_muscle.fasta
antismash/generic_modules/smcogs/smcog1039_muscle.fasta
antismash/generic_modules/smcogs/smcog1040_muscle.fasta
antismash/generic_modules/smcogs/smcog1041_muscle.fasta
antismash/generic_modules/smcogs/smcog1042_muscle.fasta
antismash/generic_modules/smcogs/smcog1043_muscle.fasta
antismash/generic_modules/smcogs/smcog1044_muscle.fasta
antismash/generic_modules/smcogs/smcog1045_muscle.fasta
antismash/generic_modules/smcogs/smcog1046_muscle.fasta
antismash/generic_modules/smcogs/smcog1047_muscle.fasta
antismash/generic_modules/smcogs/smcog1048_muscle.fasta
antismash/generic_modules/smcogs/smcog1049_muscle.fasta
antismash/generic_modules/smcogs/smcog1050_muscle.fasta
antismash/generic_modules/smcogs/smcog1051_muscle.fasta
antismash/generic_modules/smcogs/smcog1052_muscle.fasta
antismash/generic_modules/smcogs/smcog1053_muscle.fasta
antismash/generic_modules/smcogs/smcog1054_muscle.fasta
antismash/generic_modules/smcogs/smcog1055_muscle.fasta
antismash/generic_modules/smcogs/smcog1056_muscle.fasta
antismash/generic_modules/smcogs/smcog1057_muscle.fasta
antismash/generic_modules/smcogs/smcog1058_muscle.fasta
antismash/generic_modules/smcogs/smcog1059_muscle.fasta
antismash/generic_modules/smcogs/smcog1060_muscle.fasta
antismash/generic_modules/smcogs/smcog1061_muscle.fasta
antismash/generic_modules/smcogs/smcog1062_muscle.fasta
antismash/generic_modules/smcogs/smcog1063_muscle.fasta
antismash/generic_modules/smcogs/smcog1064_muscle.fasta
antismash/generic_modules/smcogs/smcog1065_muscle.fasta
antismash/generic_modules/smcogs/smcog1066_muscle.fasta
antismash/generic_modules/smcogs/smcog1067_muscle.fasta
antismash/generic_modules/smcogs/smcog1068_muscle.fasta
antismash/generic_modules/smcogs/smcog1069_muscle.fasta
antismash/generic_modules/smcogs/smcog1070_muscle.fasta
antismash/generic_modules/smcogs/smcog1071_muscle.fasta
antismash/generic_modules/smcogs/smcog1072_muscle.fasta
antismash/generic_modules/smcogs/smcog1073_muscle.fasta
antismash/generic_modules/smcogs/smcog1074_muscle.fasta
antismash/generic_modules/smcogs/smcog1075_muscle.fasta
antismash/generic_modules/smcogs/smcog1076_muscle.fasta
antismash/generic_modules/smcogs/smcog1077_muscle.fasta
antismash/generic_modules/smcogs/smcog1078_muscle.fasta
antismash/generic_modules/smcogs/smcog1079_muscle.fasta
antismash/generic_modules/smcogs/smcog1080_muscle.fasta
antismash/generic_modules/smcogs/smcog1081_muscle.fasta
antismash/generic_modules/smcogs/smcog1082_muscle.fasta
antismash/generic_modules/smcogs/smcog1083_muscle.fasta
antismash/generic_modules/smcogs/smcog1084_muscle.fasta
antismash/generic_modules/smcogs/smcog1085_muscle.fasta
antismash/generic_modules/smcogs/smcog1086_muscle.fasta
antismash/generic_modules/smcogs/smcog1087_muscle.fasta
antismash/generic_modules/smcogs/smcog1088_muscle.fasta
antismash/generic_modules/smcogs/smcog1089_muscle.fasta
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antismash/generic_modules/smcogs/smcog1091_muscle.fasta
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antismash/output_modules/html/index.tpl
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antismash/output_modules/html/images/bacteria_about.png
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antismash/specific_modules/lantipeptides/non_biosyn_hmms/PF00005.hmm
antismash/specific_modules/lantipeptides/non_biosyn_hmms/hmmdetails.txt
antismash/specific_modules/lantipeptides/svm_lanthi/__init__.py
antismash/specific_modules/lantipeptides/svm_lanthi/svm_caml.py
antismash/specific_modules/lantipeptides/svm_lanthi/svm_classify.py
antismash/specific_modules/lantipeptides/svm_lanthi/svm_optimize.py
antismash/specific_modules/lantipeptides/svm_lanthi/svm_sample.py
antismash/specific_modules/lantipeptides/svm_lanthi/training_set.csv
antismash/specific_modules/lassopeptides/__init__.py
antismash/specific_modules/lassopeptides/config.py
antismash/specific_modules/lassopeptides/html_output.py
antismash/specific_modules/lassopeptides/lasso_motifs_meme.txt
antismash/specific_modules/lassopeptides/prec_II_2838.hmm
antismash/specific_modules/lassopeptides/precursor_2637.hmm
antismash/specific_modules/lassopeptides/specific_analysis.py
antismash/specific_modules/lassopeptides/tail_cut.hmm
antismash/specific_modules/lassopeptides/svm_lasso/__init__.py
antismash/specific_modules/lassopeptides/svm_lasso/full_set.csv
antismash/specific_modules/lassopeptides/svm_lasso/little_set.csv
antismash/specific_modules/lassopeptides/svm_lasso/optimization_results.csv
antismash/specific_modules/lassopeptides/svm_lasso/svm_caml.py
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antismash/specific_modules/lassopeptides/svm_lasso/svm_optimize.py
antismash/specific_modules/lassopeptides/svm_lasso/svm_sample.py
antismash/specific_modules/lassopeptides/svm_lasso/training_set.csv
antismash/specific_modules/nrpspks/__init__.py
antismash/specific_modules/nrpspks/abmotifs.hmm
antismash/specific_modules/nrpspks/dockingdomains.hmm
antismash/specific_modules/nrpspks/html_output.py
antismash/specific_modules/nrpspks/ksdomains.hmm
antismash/specific_modules/nrpspks/nrps_utils.py
antismash/specific_modules/nrpspks/nrpspks_classification.py
antismash/specific_modules/nrpspks/nrpspksdomains.hmm
antismash/specific_modules/nrpspks/nrpspksdomains.py
antismash/specific_modules/nrpspks/orderfinder.py
antismash/specific_modules/nrpspks/parsers.py
antismash/specific_modules/nrpspks/specific_analysis.py
antismash/specific_modules/nrpspks/substrates.py
antismash/specific_modules/nrpspks/substrates_nrps.py
antismash/specific_modules/nrpspks/substrates_pks.py
antismash/specific_modules/nrpspks/Minowa/AT_domains_muscle.fasta
antismash/specific_modules/nrpspks/Minowa/ATpositions.txt
antismash/specific_modules/nrpspks/Minowa/CAL_domains_muscle.fasta
antismash/specific_modules/nrpspks/Minowa/CALpositions.txt
antismash/specific_modules/nrpspks/Minowa/__init__.py
antismash/specific_modules/nrpspks/Minowa/minowa_AT.py
antismash/specific_modules/nrpspks/Minowa/minowa_CAL.py
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/2-Methylbutyryl-CoA.hmm
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/3-Methylbutyryl-CoA.hmm
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/Acetyl-CoA.hmm
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/Benzoyl-CoA.hmm
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/CHC-CoA.hmm
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/Ethylmalonyl-CoA.hmm
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/Isobutyryl-CoA.hmm
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/Malonyl-CoA.hmm
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/Methoxymalonyl-CoA.hmm
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/Methylmalonyl-CoA.hmm
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/Propionyl-CoA.hmm
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/fatty_acid.hmm
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/inactive.hmm
antismash/specific_modules/nrpspks/Minowa/AT_HMMs/trans-1,2-CPDA.hmm
antismash/specific_modules/nrpspks/Minowa/CAL_HMMs/AHBA.hmm
antismash/specific_modules/nrpspks/Minowa/CAL_HMMs/Acetyl-CoA.hmm
antismash/specific_modules/nrpspks/Minowa/CAL_HMMs/NH2.hmm
antismash/specific_modules/nrpspks/Minowa/CAL_HMMs/fatty_acid.hmm
antismash/specific_modules/nrpspks/Minowa/CAL_HMMs/shikimic_acid.hmm
antismash/specific_modules/nrpspks/NRPSPredictor2/A34positions.txt
antismash/specific_modules/nrpspks/NRPSPredictor2/A_domains_muscle.fasta
antismash/specific_modules/nrpspks/NRPSPredictor2/Apositions.txt
antismash/specific_modules/nrpspks/NRPSPredictor2/NRPSpredictor2.sh
antismash/specific_modules/nrpspks/NRPSPredictor2/__init__.py
antismash/specific_modules/nrpspks/NRPSPredictor2/build.xml
antismash/specific_modules/nrpspks/NRPSPredictor2/knowncodes.fasta
antismash/specific_modules/nrpspks/NRPSPredictor2/nrpscodepred.py
antismash/specific_modules/nrpspks/NRPSPredictor2/build/NRPSpredictor2.jar
antismash/specific_modules/nrpspks/NRPSPredictor2/lib/Utilities.jar
antismash/specific_modules/nrpspks/NRPSPredictor2/lib/java-getopt-1.0.13.jar
antismash/specific_modules/nrpspks/NRPSPredictor2/lib/libsvm.jar
antismash/specific_modules/nrpspks/docking_analysis/cterm.fasta
antismash/specific_modules/nrpspks/docking_analysis/nterm.fasta
antismash/specific_modules/nrpspks/kr_analysis/KRdomains_muscle.fasta
antismash/specific_modules/nrpspks/kr_analysis/__init__.py
antismash/specific_modules/nrpspks/kr_analysis/kr_analysis.py
antismash/specific_modules/nrpspks/kr_analysis/refkrseq.fasta
antismash/specific_modules/nrpspks/nrpspksdomainalign/Longest_Common_Subsequence.py
antismash/specific_modules/nrpspks/nrpspksdomainalign/__init__.py
antismash/specific_modules/nrpspks/nrpspksdomainalign/calculate_distance_transATPKS.py
antismash/specific_modules/nrpspks/nrpspksdomainalign/get_module_contig_info.py
antismash/specific_modules/nrpspks/nrpspksdomainalign/get_msa_dist_matrix.py
antismash/specific_modules/nrpspks/nrpspksdomainalign/get_speciesName_in_figures.py
antismash/specific_modules/nrpspks/nrpspksdomainalign/index_domains.py
antismash/specific_modules/nrpspks/nrpspksdomainalign/munkres.py
antismash/specific_modules/nrpspks/nrpspksdomainalign/plot_domain_align.py
antismash/specific_modules/nrpspks/nrpspksdomainalign/remove_same_transATPKS.py
antismash/specific_modules/nrpspks/nrpspksdomainalign/substrates_specificity_phylo.py
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/Clade_PhyloNode_v3_color.txt
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/KS_rawseq_pred_training_transATPKS.txt
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/KSinCompound_CladeInfo_pred_transATPKS.txt
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/KSinCompound_CladeInfo_v4_exclude.txt
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/all_KSinCompound_CladeInfo_v3_exclude_fasttree.txt
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/annotateKS_perCompound_v4_uniPK.txt
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/annotateKS_per_pred_transATPKS.txt
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/genome_size_pred_transATPKS.txt
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/genome_size_training_transATPKS.txt
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/predBGC_summary_profile_reformat.txt
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/pseudoSeq_training_pred_transATPKS_completeBGCs.faa
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/pseudoSeq_training_pred_transATPKS_completeBGCs_index.faa
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/pseudo_aa_transAT.txt
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/species_ID_pred_transATPKS.txt
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/species_ID_training_transATPKS.txt
antismash/specific_modules/nrpspks/nrpspksdomainalign/data/transATPKS_id_per_unique_pseudoSeq_pred_training_v2.txt
antismash/specific_modules/nrpspks/pkssignatures/AT_domains_muscle.fasta
antismash/specific_modules/nrpspks/pkssignatures/ATpositions.txt
antismash/specific_modules/nrpspks/pkssignatures/PKS_analysis.py
antismash/specific_modules/nrpspks/pkssignatures/__init__.py
antismash/specific_modules/nrpspks/pkssignatures/pks_signatures.fasta
antismash/specific_modules/nrpspks/pkssignatures/test.txt
antismash/specific_modules/nrpspks/sandpuma/extract_adomains.sh
antismash/specific_modules/nrpspks/sandpuma/fullset20160624_cl.faa
antismash/specific_modules/nrpspks/sandpuma/predictnrps.sh
antismash/specific_modules/nrpspks/sandpuma/predictnrps_nodep.sh
antismash/specific_modules/nrpspks/sandpuma/predictnrps_nodep_par.sh
antismash/specific_modules/nrpspks/sandpuma/test.faa
antismash/specific_modules/nrpspks/sandpuma/test.sh
antismash/specific_modules/nrpspks/sandpuma/update_nrps3.sh
antismash/specific_modules/nrpspks/sandpuma/bin/adomhmm.pl
antismash/specific_modules/nrpspks/sandpuma/bin/allpred.pl
antismash/specific_modules/nrpspks/sandpuma/bin/allpred_nodep.pl
antismash/specific_modules/nrpspks/sandpuma/bin/allpred_nodep_par.pl
antismash/specific_modules/nrpspks/sandpuma/bin/buildphmmdb.pl
antismash/specific_modules/nrpspks/sandpuma/bin/classifyp.py
antismash/specific_modules/nrpspks/sandpuma/bin/cleanspec.pl
antismash/specific_modules/nrpspks/sandpuma/bin/combinesets.pl
antismash/specific_modules/nrpspks/sandpuma/bin/get_nrps_adom.pl
antismash/specific_modules/nrpspks/sandpuma/bin/get_nrps_prot.pl
antismash/specific_modules/nrpspks/sandpuma/bin/mibig_id_new.py
antismash/specific_modules/nrpspks/sandpuma/bin/mibig_mktbl.py
antismash/specific_modules/nrpspks/sandpuma/bin/par.py
antismash/specific_modules/nrpspks/sandpuma/bin/parbreakup.pl
antismash/specific_modules/nrpspks/sandpuma/bin/rescore.pl
antismash/specific_modules/nrpspks/sandpuma/bin/stachextract.pl
antismash/specific_modules/nrpspks/sandpuma/bin/tbn2faa.pl
antismash/specific_modules/nrpspks/sandpuma/bin/treeparserscore.py
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/A34positions.txt
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/A_domains_muscle.fasta
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/Apositions.txt
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/NRPSpredictor2.sh
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/build.xml
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/infile.fasta
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/input.sig
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/knowncodes.fasta
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/muscle.fasta
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/nrpscodepred.py
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/nrpspredictor2_codes.txt
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/bin/org/roettig/NRPSpredictor2/ADomain.class
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/bin/org/roettig/NRPSpredictor2/Detection.class
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/bin/org/roettig/NRPSpredictor2/NRPSpredictor2.class
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/bin/org/roettig/NRPSpredictor2/PrimalEncoder.class
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/bin/org/roettig/NRPSpredictor2/PrimalRauschEncoder.class
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/bin/org/roettig/NRPSpredictor2/PrimalWoldEncoder.class
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/bin/org/roettig/NRPSpredictor2/svm/FeatureVector.class
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/bin/org/roettig/NRPSpredictor2/svm/KernelFunction.class
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/bin/org/roettig/NRPSpredictor2/svm/LinearKernel.class
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/bin/org/roettig/NRPSpredictor2/svm/RBFKernel.class
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/bin/org/roettig/NRPSpredictor2/svm/SVMlightModel.class
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/bin/org/roettig/NRPSpredictor2/svm/SupportVector.class
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/build/NRPSpredictor2.jar
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/data/fungal_labeled_sigs
antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/data/labeled_sigs
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antismash/specific_modules/nrpspks/sandpuma/dependencies/NRPSPredictor2/src/org/roettig/NRPSpredictor2/Detection.java
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/deoxy-thr_1.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/deoxy-thr_1.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/deoxy-thr_1.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dhab-dht_1.clw
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dhabu_1.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dhabu_1.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dhabu_1.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dhb-sal_1.clw
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dhb-sal_1.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dhb-sal_2.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dhb-sal_2.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dhb-sal_2.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dhb_1.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dhb_1.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dhb_1.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dpg_1.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dpg_1.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dpg_1.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dpg_2.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dpg_2.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/dpg_2.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_1.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_1.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_1.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_2.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_2.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_2.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_3.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_3.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_3.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_4.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_4.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_4.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_5.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gln_5.faa
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_1.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_1.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_1.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_2.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_2.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_2.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_3.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_3.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_3.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_4.clw
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_6.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_6.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_6.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_7.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_7.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_7.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_8.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_8.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_8.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_9.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_9.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/glu_9.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_1.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_1.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_1.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_2.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_2.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_2.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_3.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_3.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_3.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_4.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_4.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_4.hmm
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_5.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_5.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_6.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_6.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/gly_6.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/horn_1.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/horn_1.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/horn_1.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/horn_2.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/horn_2.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/horn_2.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg-hpg2cl_1.clw
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg-hpg2cl_2.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg-hpg2cl_3.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg-hpg2cl_3.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg-hpg2cl_3.hmm
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg-hpg2cl_4.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg-hpg2cl_4.hmm
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg-hpg2cl_6.clw
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg-hpg2cl_6.hmm
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg-hpg2cl_7.hmm
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg-hpg2cl_8.hmm
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg_1.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg_2.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg_2.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg_2.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg_3.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg_3.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hpg_3.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hse_1.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hse_1.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/hse_1.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/ile_1.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/ile_1.faa
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/ile_2.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/ile_2.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/ile_2.hmm
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/ile_3.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/ile_3.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/ile_4.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/ile_4.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/ile_4.hmm
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/ile_5.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/ile_5.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/kyn_1.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/kyn_1.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/kyn_1.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_1.clw
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antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_1.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_10.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_10.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_10.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_11.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_11.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_11.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_12.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_12.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_12.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_13.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_13.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_13.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_14.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_14.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_14.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_15.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_15.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_15.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_16.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_16.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_16.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_17.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_17.faa
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_17.hmm
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_2.clw
antismash/specific_modules/nrpspks/sandpuma/flat/fullset0_smiles/fullset0_smiles_groupfiles/leu_2.faa
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antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[aad].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[ala].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[arg].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[asn].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[asp].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[bht].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[cys].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[dhb].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[dhpg].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[gln].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[glu].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[gly].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[hpg].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[ile].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[iva].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[leu].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[lys].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[orn].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[phe].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[pip].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[pro].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[ser].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[thr].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[trp].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[tyr].mdl
antismash/specific_modules/nrpspks/sandpuma/flat/svm/NRPS2_SINGLE_CLUSTER/[val].mdl
antismash/specific_modules/sactipeptides/__init__.py
antismash/specific_modules/sactipeptides/html_output.py
antismash/specific_modules/sactipeptides/specific_analysis.py
antismash/specific_modules/sactipeptides/non_biosyn_hmms/PF00005.hmm
antismash/specific_modules/sactipeptides/non_biosyn_hmms/PF00072.hmm
antismash/specific_modules/sactipeptides/non_biosyn_hmms/PF00664.hmm
antismash/specific_modules/sactipeptides/non_biosyn_hmms/PF02518.hmm
antismash/specific_modules/sactipeptides/non_biosyn_hmms/PF07690.hmm
antismash/specific_modules/sactipeptides/non_biosyn_hmms/PF13304.hmm
antismash/specific_modules/sactipeptides/non_biosyn_hmms/hmmdetails.txt
antismash/specific_modules/sactipeptides/svm_sacti/__init__.py
antismash/specific_modules/sactipeptides/svm_sacti/svm_caml.py
antismash/specific_modules/sactipeptides/svm_sacti/svm_classify.py
antismash/specific_modules/sactipeptides/svm_sacti/svm_optimize.py
antismash/specific_modules/sactipeptides/svm_sacti/svm_sample.py
antismash/specific_modules/sactipeptides/svm_sacti/training_set.csv
antismash/specific_modules/terpenes/SCO6073.fasta
antismash/specific_modules/terpenes/__init__.py
antismash/specific_modules/terpenes/allterp.db.dmnd
antismash/specific_modules/terpenes/allterp.faa
antismash/specific_modules/terpenes/html_output.py
antismash/specific_modules/terpenes/predictterp_nodep.sh
antismash/specific_modules/terpenes/specific_analysis.py
antismash/specific_modules/terpenes/terp.db.dmnd
antismash/specific_modules/terpenes/terp.faa
antismash/specific_modules/terpenes/terp_predicat.pl
antismash/specific_modules/terpenes/terp_predicat_nodep.pl
antismash/specific_modules/terpenes/terpene_synthase_annotations.txt
antismash/specific_modules/terpenes/terpene_synthase_annotations_vs_accessions.txt
antismash/specific_modules/terpenes/test.faa
antismash/specific_modules/terpenes/treeparserscore.pl
antismash/specific_modules/terpenes/treeparserscore.py
antismash/specific_modules/thiopeptides/__init__.py
antismash/specific_modules/thiopeptides/html_output.py
antismash/specific_modules/thiopeptides/specific_analysis.py
antismash/specific_modules/thiopeptides/thio_cleave.hmm
antismash/specific_modules/thiopeptides/thio_tail.hmm
antismash/specific_modules/thiopeptides/thiopep2.hmm
antismash/specific_modules/thiopeptides/non_biosyn_hmms/PF00005.hmm
antismash/specific_modules/thiopeptides/non_biosyn_hmms/PF01061.hmm
antismash/specific_modules/thiopeptides/non_biosyn_hmms/PF12698.hmm
antismash/specific_modules/thiopeptides/non_biosyn_hmms/hmmdetails.txt
antismash/specific_modules/thiopeptides/svm_thio/__init__.py
antismash/specific_modules/thiopeptides/svm_thio/svm_caml.py
antismash/specific_modules/thiopeptides/svm_thio/svm_classify.py
antismash/specific_modules/thiopeptides/svm_thio/svm_optimize.py
antismash/specific_modules/thiopeptides/svm_thio/svm_sample.py
antismash/specific_modules/thiopeptides/svm_thio/training_set.csv
antismash/test/__init__.py
antismash/test/requirements.txt
antismash/test/test.cfg
antismash/test/test.hmm
antismash/test/test_config.py
antismash/test/test_runsmash.py
antismash/test/test_sys.cfg
antismash/test/test_user.cfg
antismash/test/test_utils.py
antismash/test/integration/integration_balh.py
scripts/cleanup.sh
scripts/create_bgc_seeds.sh
scripts/create_release_tarball.sh
scripts/MPI/hmm_search-finish.sh
scripts/MPI/hmm_search-start.sh
scripts/MPI/hmm_search.sh