# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/abyss, last modified Wed Dec 18 22:33:28 2024
# ------------------------------------------------

package:
  name: abyss
  version: 2.3.10
source:
  sha256: bbe42e00d1ebb53ec6afaad07779baaaee994aa5c65b9a38cf4ad2011bb93c65
  url: https://github.com/bcgsc/abyss/releases/download/2.3.10/abyss-2.3.10.tar.gz
build:
  number: '1'
  run_exports:
    - abyss >=2.3.10,<3.0a0
  string: h65aa485_1
requirements:
  build:
    - autoconf 2.71 pl5321hed12c24_1
    - automake 1.17 pl5321h694c41f_0
    - ca-certificates 2024.12.14 h8857fd0_0
    - cctools_osx-64 1010.6 h00edd4c_2
    - clang 18.1.8 default_h179603d_5
    - clang-18 18.1.8 default_h0c94c6a_5
    - clang_impl_osx-64 18.1.8 h6a44ed1_23
    - clang_osx-64 18.1.8 h7e5c614_23
    - clangxx 18.1.8 default_h179603d_5
    - clangxx_impl_osx-64 18.1.8 h4b7810f_23
    - clangxx_osx-64 18.1.8 h7e5c614_23
    - compiler-rt 18.1.8 h1020d70_1
    - compiler-rt_osx-64 18.1.8 hf2b8a54_1
    - ld64_osx-64 951.9 hc8d1a19_2
    - libclang-cpp18.1 18.1.8 default_h0c94c6a_5
    - libcxx 19.1.6 hf95d169_1
    - libcxx-devel 18.1.8 h7c275be_7
    - libiconv 1.17 hd75f5a5_2
    - libllvm18 18.1.8 h9ce406d_2
    - liblzma 5.6.3 hd471939_1
    - libtool 2.4.7 hf036a51_1
    - libxml2 2.13.5 he8ee3e7_1
    - libzlib 1.3.1 hd23fc13_2
    - llvm-tools 18.1.8 h9ce406d_2
    - llvm-tools-18 18.1.8 h9ce406d_2
    - m4 1.4.18 haf1e3a3_1001
    - make 4.4.1 h00291cd_2
    - ncurses 6.5 hf036a51_1
    - openssl 3.4.0 hd471939_0
    - perl 5.32.1 7_h10d778d_perl5
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1300.6.5 h390ca13_0
    - zstd 1.5.6 h915ae27_0
  host:
    - boost-cpp 1.85.0 h07eb623_2
    - btllib 1.7.3 py312h5b42d81_1
    - bzip2 1.0.8 hfdf4475_7
    - c-ares 1.34.4 hf13058a_0
    - ca-certificates 2024.12.14 h8857fd0_0
    - gettext 0.22.5 hdfe23c8_3
    - gettext-tools 0.22.5 hdfe23c8_3
    - gzip 1.13 h37ebe6b_0
    - htslib 1.21 hec81eee_0
    - icu 73.2 hf5e326d_0
    - krb5 1.21.3 h37d8d59_0
    - libasprintf 0.22.5 hdfe23c8_3
    - libasprintf-devel 0.22.5 hdfe23c8_3
    - libboost 1.85.0 h739af76_2
    - libboost-devel 1.85.0 h2b186f8_2
    - libboost-headers 1.85.0 h694c41f_2
    - libcurl 8.8.0 hf9fcc65_1
    - libcxx 19.1.6 hf95d169_1
    - libdeflate 1.21 hfdf4475_0
    - libedit 3.1.20191231 h0678c8f_2
    - libev 4.33 h10d778d_2
    - libexpat 2.6.4 h240833e_0
    - libffi 3.4.2 h0d85af4_5
    - libgettextpo 0.22.5 hdfe23c8_3
    - libgettextpo-devel 0.22.5 hdfe23c8_3
    - libgfortran 5.0.0 13_2_0_h97931a8_3
    - libgfortran5 13.2.0 h2873a65_3
    - libiconv 1.17 hd75f5a5_2
    - libidn2 2.3.7 h10d778d_0
    - libintl 0.22.5 hdfe23c8_3
    - libintl-devel 0.22.5 hdfe23c8_3
    - liblzma 5.6.3 hd471939_1
    - liblzma-devel 5.6.3 hd471939_1
    - libnghttp2 1.58.0 h64cf6d3_1
    - libsqlite 3.46.0 h1b8f9f3_0
    - libssh2 1.11.0 hd019ec5_0
    - libunistring 0.9.10 h0d85af4_0
    - libzlib 1.2.13 h87427d6_6
    - llvm-openmp 19.1.6 ha54dae1_0
    - lrzip 0.621 h039514f_7
    - lzo 2.10 h10d778d_1001
    - mpi 1.0 openmpi
    - ncurses 6.5 hf036a51_1
    - openmpi 4.1.6 h7406208_101
    - openssl 3.4.0 hd471939_0
    - pigz 2.8 h92b6c6a_0
    - python 3.12.3 h1411813_0_cpython
    - python_abi 3.12 5_cp312
    - readline 8.2 h9e318b2_1
    - samtools 1.21 h94387ee_0
    - sparsehash 2.0.4 hf0c8a7f_1
    - tar 1.34 hcb2f6ea_1
    - tk 8.6.13 h1abcd95_1
    - tzdata 2024b hc8b5060_0
    - wget 1.21.4 hca547e6_0
    - xz 5.6.3 h357f2ed_1
    - xz-gpl-tools 5.6.3 h357f2ed_1
    - xz-tools 5.6.3 hd471939_1
    - zip 3.0 h0dc2134_3
    - zlib 1.2.13 h87427d6_6
    - zstd 1.5.6 h915ae27_0
  run:
    - boost-cpp
    - btllib >=1.7.3,<2.0a0
    - libcxx >=18
    - make
    - openmpi >=4.1.6,<5.0a0
    - perl
test:
  commands:
    - ABYSS-P --version | grep -q "2.3.10"
    - ABYSS --version | grep -q "2.3.10"
    - abyss-pe help | grep -q "Assemble reads into contigs and scaffolds"
about:
  dev_url: https://github.com/bcgsc/abyss
  doc_url: https://github.com/bcgsc/abyss/blob/v2.3.10/README.md
  home: https://www.bcgsc.ca/platform/bioinfo/software/abyss
  license: GPL-3.0-only
  license_family: GPL3
  license_file: LICENSE
  summary: Assembly By Short Sequences - a de novo, parallel, paired-end short read
    sequence assembler.
extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  container:
    extended-base: true
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:abyss
    - doi:10.1101/gr.089532.108
    - doi:10.1101/gr.214346.116
    - usegalaxy-eu:abyss-pe
