# This file created by conda-build 3.18.9
# meta.yaml template originally from:
# /opt/recipe, last modified Thu Nov 14 18:27:29 2019
# ------------------------------------------------

package:
    name: wg-blimp
    version: 0.9.4
source:
    sha256: 9b75f1dae0337a1493a22fbab0587a18faa537b268b11c6fbdda658a72b5f109
    url: https://github.com/MarWoes/wg-blimp/releases/download/v0.9.4/wg-blimp-v0.9.4.tar.gz
build:
    noarch: python
    number: '0'
    script: /opt/conda/conda-bld/wg-blimp_1573756204266/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/bin/python
        -m pip install . --no-deps -vv
    string: py_0
requirements:
    host:
        - _libgcc_mutex 0.1 main
        - ca-certificates 2019.9.11 hecc5488_0
        - certifi 2019.9.11 py38_0
        - libffi 3.2.1 he1b5a44_1006
        - libgcc-ng 9.1.0 hdf63c60_0
        - libstdcxx-ng 9.1.0 hdf63c60_0
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1d h516909a_0
        - pip 19.3.1 py38_0
        - python 3.8.0 h357f687_3
        - readline 8.0 hf8c457e_0
        - setuptools 41.6.0 py38_1
        - sqlite 3.30.1 hcee41ef_0
        - tk 8.6.9 hed695b0_1003
        - wheel 0.33.6 py38_0
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h516909a_1006
    run:
        - bedtools
        - bioconductor-bsseq
        - bioconductor-methylseekr
        - bwa
        - bwameth 0.2.0.*
        - click
        - fastqc
        - git
        - h5py
        - methyldackel
        - metilene
        - mosdepth
        - multiqc
        - picard
        - pysam
        - python >=3.5
        - qualimap
        - r-data.table
        - r-dt
        - r-ggplot2
        - r-htmlwidgets
        - r-httpuv
        - r-kernsmooth
        - r-shiny
        - r-shinydashboard
        - r-stringi
        - r-stringr
        - r-upsetr
        - ruamel.yaml
        - samtools
        - snakemake
test:
    commands:
        - wg-blimp --help
about:
    description: 'wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis
        Pipeline) can be utilised to analyse WGBS data.

        It performs alignment, qc, methylation calling, DMR calling and DMR annotation
        using a multitude of tools.

        '
    home: https://github.com/MarWoes/wg-blimp
    license: AGPL-3.0
    license_family: GPL
    license_file: LICENSE
    summary: wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis Pipeline)
extra:
    container:
        extended-base: true
    copy_test_source_files: true
    final: true
