#      seq                    ftr   ftr   ftr  alert           alert                        alert 
#idx   name        model      type  name  idx  code      fail  desc                         detail
#----  ----------  ---------  ----  ----  ---  --------  ----  ---------------------------  ------
9.1.1  JN975492.1  NC_008311  CDS   VF1     6  mutendcd  yes   MUTATION_AT_END              expected stop codon could not be identified, predicted CDS stop by homology is invalid [TCA ending at position 5685 on + strand is not a valid stop]
9.1.2  JN975492.1  NC_008311  CDS   VF1     6  cdsstopn  yes   CDS_HAS_STOP_CODON           in-frame stop codon exists 5' of stop position predicted by homology to reference [revised to 5044..5277 (stop shifted 408 nt)]
9.1.3  JN975492.1  NC_008311  CDS   VF1     6  cdsstopp  yes   CDS_HAS_STOP_CODON           stop codon in protein-based alignment [stop codon(s) end at position(s) 5277]
9.1.4  JN975492.1  NC_008311  CDS   VF1     6  indf3pst  yes   INDEFINITE_ANNOTATION_END    protein-based alignment does not extend close enough to nucleotide-based alignment 3' endpoint [36 > 5 (strand:+ CM:5685 blastx:5649, no valid stop codon in CM prediction)]
9.2.1  JN975492.1  NC_008311  CDS   VP2     8  indf5pst  yes   INDEFINITE_ANNOTATION_START  protein-based alignment does not extend close enough to nucleotide-based alignment 5' endpoint [54 > 5 (strand:+ CM:6656 blastx:6710)]
