# This file created by conda-build 24.5.1
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Oct 16 22:49:31 2024
# ------------------------------------------------

package:
  name: umicollapse
  version: 1.1.0
source:
  sha256: 01b8ff5b6bcc775b277e92f5414e7e94019bfbe47fe0850810ab4e33500992b1
  url: https://github.com/siddharthab/UMICollapse/archive/refs/tags/v1.1.0.tar.gz
build:
  noarch: generic
  number: '0'
  run_exports:
    - umicollapse >=1.1.0,<2.0a0
  string: hdfd78af_0
requirements:
  build: []
  run:
    - openjdk >=17
    - python
test:
  commands:
    - which umicollapse
about:
  description: UMIs are a popular way to identify duplicate DNA/RNA reads caused by
    PCR amplification. This requires software for collapsing duplicate reads with
    the same UMI, while accounting for sequencing/PCR errors. This tool implements
    many efficient algorithms for orders-of-magnitude faster UMI deduplication than
    previous tools (UMI-tools, etc.), while maintaining similar functionality. This
    is achieved by using faster data structures with n-grams and BK-trees, along other
    techniques that are carefully implemented to scale well to larger datasets and
    longer UMIs. Users of UMICollapse have reported speedups from taking hours or
    days to run with a previous tool to taking only a few minutes with this tool with
    real datasets! doi 10.7717/peerj.8275.
  home: https://github.com/Daniel-Liu-c0deb0t/UMICollapse
  license: MIT
  license_family: MIT
  summary: Accelerating the deduplication and collapsing process for reads with Unique
    Molecular Identifiers (UMI).
extra:
  copy_test_source_files: true
  final: true
