# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Sun Feb 16 11:52:31 2025
# ------------------------------------------------

package:
  name: tb-profiler
  version: 6.6.0
source:
  sha256: 47ed79b009beeb13b516c8cb72388d458aabedd99fe406bda7986678841923ab
  url: https://github.com/jodyphelan/TBProfiler/archive/v6.6.0.tar.gz
build:
  noarch: python
  number: '0'
  run_exports:
    - tb-profiler >=6.6.0,<7.0a0
  string: pyhdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - alsa-lib 1.2.13 hb9d3cd8_0
    - bwa 0.7.18 h577a1d6_2
    - bzip2 1.0.8 h4bc722e_7
    - c-ares 1.34.4 hb9d3cd8_0
    - ca-certificates 2025.1.31 hbcca054_0
    - cairo 1.18.2 h3394656_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 h77eed37_3
    - fontconfig 2.15.0 h7e30c49_1
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 h267a509_2
    - gatk4 4.6.1.0 py310hdfd78af_0
    - giflib 5.2.2 hd590300_0
    - graphite2 1.3.13 h59595ed_1003
    - harfbuzz 10.2.0 h4bba637_0
    - htslib 1.21 h566b1c6_1
    - icu 75.1 he02047a_0
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.3 h659f571_0
    - lcms2 2.17 h717163a_0
    - ld_impl_linux-64 2.43 h712a8e2_2
    - lerc 4.0.0 h27087fc_0
    - libcups 2.3.3 h4637d8d_4
    - libcurl 8.12.1 h332b0f4_0
    - libdeflate 1.23 h4ddbbb0_0
    - libedit 3.1.20250104 pl5321h7949ede_0
    - libev 4.33 hd590300_2
    - libexpat 2.6.4 h5888daf_0
    - libffi 3.4.6 h2dba641_0
    - libgcc 14.2.0 h77fa898_1
    - libgcc-ng 14.2.0 h69a702a_1
    - libglib 2.82.2 h2ff4ddf_1
    - libgomp 14.2.0 h77fa898_1
    - libiconv 1.17 hd590300_2
    - libjpeg-turbo 3.0.0 hd590300_1
    - liblzma 5.6.4 hb9d3cd8_0
    - libmpdec 4.0.0 h4bc722e_0
    - libnghttp2 1.64.0 h161d5f1_0
    - libpng 1.6.46 h943b412_0
    - libsqlite 3.48.0 hee588c1_1
    - libssh2 1.11.1 hf672d98_0
    - libstdcxx 14.2.0 hc0a3c3a_1
    - libstdcxx-ng 14.2.0 h4852527_1
    - libtiff 4.7.0 hd9ff511_3
    - libuuid 2.38.1 h0b41bf4_0
    - libwebp-base 1.5.0 h851e524_0
    - libxcb 1.17.0 h8a09558_0
    - libxcrypt 4.4.36 hd590300_1
    - libzlib 1.3.1 hb9d3cd8_2
    - ncurses 6.5 h2d0b736_3
    - openjdk 17.0.14 he4ca013_0
    - openssl 3.4.1 h7b32b05_0
    - pcre2 10.44 hba22ea6_2
    - perl 5.32.1 7_hd590300_perl5
    - pip 25.0.1 pyh145f28c_0
    - pixman 0.44.2 h29eaf8c_0
    - pthread-stubs 0.4 hb9d3cd8_1002
    - python 3.13.2 hf636f53_100_cp313
    - python_abi 3.13 5_cp313
    - readline 8.2 h8228510_1
    - samtools 1.21 h96c455f_1
    - setuptools 75.8.0 pyhff2d567_0
    - snpeff 5.2 hdfd78af_1
    - tk 8.6.13 noxft_h4845f30_101
    - tzdata 2025a h78e105d_0
    - xorg-libice 1.1.2 hb9d3cd8_0
    - xorg-libsm 1.2.5 he73a12e_0
    - xorg-libx11 1.8.11 h4f16b4b_0
    - xorg-libxau 1.0.12 hb9d3cd8_0
    - xorg-libxdmcp 1.1.5 hb9d3cd8_0
    - xorg-libxext 1.3.6 hb9d3cd8_0
    - xorg-libxfixes 6.0.1 hb9d3cd8_0
    - xorg-libxi 1.8.2 hb9d3cd8_0
    - xorg-libxrandr 1.5.4 hb9d3cd8_0
    - xorg-libxrender 0.9.12 hb9d3cd8_0
    - xorg-libxt 1.3.1 hb9d3cd8_0
    - xorg-libxtst 1.2.5 hb9d3cd8_3
    - zlib 1.3.1 hb9d3cd8_2
    - zstd 1.5.6 ha6fb4c9_0
  run:
    - docxtpl
    - filelock
    - git
    - jinja2
    - joblib
    - pathogen-profiler =4.8.0
    - pysam
    - python >=3.8
    - pyyaml
    - rich-argparse
    - tqdm
test:
  commands:
    - tb-profiler
  imports:
    - pathogenprofiler
    - tbprofiler
about:
  home: https://github.com/jodyphelan/TBProfiler
  license: GPL-3.0-or-later
  license_family: GPL3
  license_file: LICENSE
  summary: Profiling tool for Mycobacterium tuberculosis to detect drug resistance
    and lineage from sequencing data
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - doi:10.1186/s13073-019-0650-x
