svist4get 1.3
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[POST-INSTALL EXAMPLE DATA]
--sampledata
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[MANDATORY ARGUMENTS]
-t <id> OR -g <id> OR -t <id> -w tss|tis <upstream> <downstream> 
OR -w <contig> <start> <end>
-fa <file.fa> ; -gtf <file.gtf>
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[OPTIONAL ARGUMENTS]
-bg <file1.bedGraph> [<file2.bedGraph>...]
-pbg <file1A.bedGraph file1A.bedGraph> [ -pbg <file2A.bedGraph file2B.bedGrap>...]
-c <path> |A4_p1|A4_p2|A4_l ; -o <name> 
-hi ; -rc ; -bgb mean|median|max|min|none
-bg_log ; -nts ; -aas auto|tics|codons
-it <text> ; -xs <N> ; -lb <N1> [<N2>..]
-ys <N1> [<N2>...] ; -bul <N1> <N2>... | max ; -bll <N1> <N2>... | min
-bl <tex1t> <text2>  ; -bgc <color1>[color2>..]; -blp left|center|right
-gi <s-e> [<s1-e1>...] ; -gil <tex1t> <text2>...
-gic <color1>[<color2>..] ; -st <transcript_id1> <transcript_id2>...
-tl <transcript_id> <label> ; -hrf <N> 
-tls auto|both|id|name|gene_id|none
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[MISCELLANEOUS ARGUMENTS]
-h, --help ; -v, --version ; --debug
-hf <x1> <x2> <label> ; -hc <NtNtNt>
--verbose

Use -h, --help for detailed help message


