Iqtree - Infer Phylogeny
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Infer phylogenetic relationships between aligned sequences

**Location**

- *Filepath:* <SnakeLines_dir>/rules/shared/reference/phylogeny/iqtree.snake
- *Rule name:* iqtree__infer_phylogeny

**Input(s):**

- *alignment:* Aligned sequences in ALN format

**Output(s):**

- *tree:* Phylogenetic tree with distances between sequences

**Param(s):**

- *model:* Model to use for phylo tree generation - see iqtree documentation for more detail

