[console_scripts]
sequana = sequana.scripts.main.main:main
sequana_coverage = sequana.scripts.coverage:main
sequana_substractor = sequana.scripts.substractor:main
sequana_taxonomy = sequana.scripts.taxonomy:main

[multiqc.hooks.v1]
before_config = sequana.multiqc.config:load_config

[multiqc.modules.v1]
sequana_bamtools_stats = sequana.multiqc.bamtools_stats:MultiqcModule
sequana_coverage = sequana.multiqc.coverage:MultiqcModule
sequana_isoseq = sequana.multiqc.isoseq:MultiqcModule
sequana_isoseq_qc = sequana.multiqc.isoseq_qc:MultiqcModule
sequana_kraken = sequana.multiqc.kraken:MultiqcModule
sequana_laa = sequana.multiqc.laa:MultiqcModule
sequana_pacbio_amplicon = sequana.multiqc.pacbio_amplicon:MultiqcModule
sequana_pacbio_qc = sequana.multiqc.pacbio_qc:MultiqcModule
sequana_quality_control = sequana.multiqc.quality_control:MultiqcModule

[sequana.module]
sequana_coverage = sequana.modules_report.coverage:CoverageModule
sequana_summary = sequana.modules_report.summary:SummaryModule
sequana_variant_calling = sequana.modules_report.variant_calling:VariantCallingModule
