from ._chain_qc import chain_pairing, chain_qc
from ._clonal_expansion import clonal_expansion, summarize_clonal_expansion
from ._diversity import alpha_diversity
from ._group_abundance import group_abundance
from ._spectratype import spectratype
from ._repertoire_overlap import repertoire_overlap
from ._clonotype_imbalance import clonotype_imbalance
from ._clonotypes import (
    define_clonotypes,
    define_clonotype_clusters,
    clonotype_network,
    clonotype_network_igraph,
)
from ._convergence import clonotype_convergence
from ._clonotype_modularity import clonotype_modularity
from ._ir_query import ir_query, ir_query_annotate, ir_query_annotate_df
