from .base import embedding
from ._diversity import alpha_diversity
from ._clonal_expansion import clonal_expansion

# Chain convergence is currently disabled
# from ._cdr_convergence import cdr_convergence
from ._group_abundance import group_abundance
from ._spectratype import spectratype
from ._vdj_usage import vdj_usage
from ._repertoire_overlap import repertoire_overlap
from ._clonotype_imbalance import clonotype_imbalance
from ._clonotype_modularity import clonotype_modularity

from ._clonotypes import clonotype_network, COLORMAP_EDGES
