********************************************************************************
MAST - Motif Alignment and Search Tool
********************************************************************************
	MAST version 5.1.1 (Release date: Wed Jan 29 15:00:42 2020 -0800)

	For further information on how to interpret these results please access http://meme-suite.org/.
	To get a copy of the MAST software please access http://meme-suite.org.
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********************************************************************************
REFERENCE
********************************************************************************
	If you use this program in your research, please cite:

	Timothy L. Bailey and Michael Gribskov,
	"Combining evidence using p-values: application to sequence homology
	searches", Bioinformatics, 14(48-54), 1998.
********************************************************************************


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DATABASE AND MOTIFS
********************************************************************************
	DATABASE sequences.fa (peptide)
	Last updated on Wed Feb  5 23:10:05 2020
	Database contains 16 sequences, 1890 residues

	MOTIFS meme.xml (peptide)
	MOTIF ID                            ALT ID WIDTH BEST POSSIBLE MATCH
	----- ----------------------------- ------ ----- -------------------
	    1 LLMGTETFTKTYNEGSDSDNB         MEME-1    21 WWWWWWWWWWWWWWWWWWWWW
	    2 MKPLILQFTEKPTEENIDYSQIEYSKKLN MEME-2    29 WWWWWWWWWWWWWWWWWWWWWWWWWWWWW
	    3 SVDKKTGLPAI                   MEME-3    11 WWWWWWWWWWW

	PAIRWISE MOTIF CORRELATIONS:
	MOTIF     1     2
	----- ----- -----
	   2   0.63
	   3   0.65  0.70
	Correlations above 0.60 may cause some combined p-values and
	E-values to be underestimates.
	Removing motifs 2 and 3 from the query may be advisable.

	Random model letter frequencies (from non-redundant database):
	A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058 
	L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064 
	W 0.013 Y 0.033 
********************************************************************************


********************************************************************************
SECTION I: HIGH-SCORING SEQUENCES
********************************************************************************
	- Each of the following 16 sequences has E-value less than 10.
	- The E-value of a sequence is the expected number of sequences
	  in a random database of the same size that would match the motifs as
	  well as the sequence does and is equal to the combined p-value of the
	  sequence times the number of sequences in the database.
	- The combined p-value of a sequence measures the strength of the
	  match of the sequence to all the motifs and is calculated by
	    o finding the score of the single best match of each motif
	      to the sequence (best matches may overlap),
	    o calculating the sequence p-value of each score,
	    o forming the product of the p-values,
	    o taking the p-value of the product.
	- The sequence p-value of a score is defined as the
	  probability of a random sequence of the same length containing
	  some match with as good or better a score.
	- The score for the match of a position in a sequence to a motif
	  is computed by by summing the appropriate entry from each column of
	  the position-dependent scoring matrix that represents the motif.
	- Sequences shorter than one or more of the motifs are skipped.
	- The table is sorted by increasing E-value.
********************************************************************************

SEQUENCE NAME                      DESCRIPTION                   E-VALUE  LENGTH
-------------                      -----------                   -------- ------
557                                                               1.1e-19    115
561                                                                 2e-19    115
556                                                               2.4e-19    114
558                                                               2.6e-19    114
545                                                               3.9e-19    142
551                                                               1.1e-18    123
550                                                                 2e-18     98
552                                                               7.2e-18    123
553                                                                 9e-17    112
559                                                               1.2e-16    114
549                                                               1.9e-16    122
554                                                               7.4e-15    144
547                                                               2.1e-11    110
546                                                               9.2e-06    111
560                                                               0.00059    115
548                                                               0.00063    118

********************************************************************************



********************************************************************************
SECTION II: MOTIF DIAGRAMS
********************************************************************************
	- The ordering and spacing of all non-overlapping motif occurrences
	  are shown for each high-scoring sequence listed in Section I.
	- A motif occurrence is defined as a position in the sequence whose
	  match to the motif has POSITION p-value less than 0.0001.
	- The POSITION p-value of a match is the probability of
	  a single random subsequence of the length of the motif
	  scoring at least as well as the observed match.
	- For each sequence, all motif occurrences are shown unless there
	  are overlaps.  In that case, a motif occurrence is shown only if its
	  p-value is less than the product of the p-values of the other
	  (lower-numbered) motif occurrences that it overlaps.
	- The table also shows the E-value of each sequence.
	- Spacers and motif occurences are indicated by
	   o -d-    `d' residues separate the end of the preceding motif 
		    occurrence and the start of the following motif occurrence
	   o [n]  occurrence of motif `n' with p-value less than 0.0001.
********************************************************************************

SEQUENCE NAME                      E-VALUE   MOTIF DIAGRAM
-------------                      --------  -------------
557                                 1.1e-19  [2]-1-[3]-2-[1]-6-[1]-24
561                                   2e-19  [2]-1-[3]-2-[1]-6-[1]-24
545                                 3.9e-19  [2]-1-[3]-2-[1]-6-[1]-6-[1]-24
551                                 1.1e-18  11-[2]-1-[3]-2-[1]-3-[1]-24
550                                   2e-18  [2]-1-[3]-2-[1]-3-[1]-10
552                                 7.2e-18  11-[2]-1-[3]-2-[1]-3-[1]-24
553                                   9e-17  [2]-1-[3]-2-[1]-3-[1]-24
549                                 1.9e-16  3-[2]-1-[3]-2-[1]-4-[1]-8-[1]-1
554                                 7.4e-15  [2]-2-[3]-2-[1]-8-[1]-7-[1]-22
547                                 2.1e-11  [2]-13-[1]-3-[1]-23
546                                 9.2e-06  43-[1]-2-[1]-24
560                                 0.00059  46-[1]-4-[1]-23
548                                 0.00063  31-[3]-2-[1]-53

********************************************************************************



********************************************************************************
SECTION III: ANNOTATED SEQUENCES
********************************************************************************
	- The positions and p-values of the non-overlapping motif occurrences
	  are shown above the actual sequence for each of the high-scoring
	  sequences from Section I.
	- A motif occurrence is defined as a position in the sequence whose
	  match to the motif has POSITION p-value less than 0.0001 as 
	  defined in Section II.
	- For each sequence, the first line specifies the name of the sequence.
	- The second (and possibly more) lines give a description of the 
	  sequence.
	- Following the description line(s) is a line giving the length, 
	  combined p-value, and E-value of the sequence as defined in Section I.
	- The next line reproduces the motif diagram from Section II.
	- The entire sequence is printed on the following lines.
	- Motif occurrences are indicated directly above their positions in the
	  sequence on lines showing
	   o the motif number of the occurrence,
	   o the position p-value of the occurrence,
	   o the best possible match to the motif, and
	   o columns whose match to the motif has a positive score (indicated 
	     by a plus sign).
********************************************************************************


557
  LENGTH = 115  COMBINED P-VALUE = 6.66e-21  E-VALUE =  1.1e-19
  DIAGRAM: [2]-1-[3]-2-[1]-6-[1]-24

     [2]                           [3]          [1]                        [1]
     7.8e-14                       1.5e-06      4.2e-11                    3.2e-
     WWWWWWWWWWWWWWWWWWWWWWWWWWWWW WWWWWWWWWWW  WWWWWWWWWWWWWWWWWWWWW      WWWWW
     +++++++++++++++++++++++++++++ ++++++ ++++  + +++++++++++++++++++      +++++
1    MKPLILEFTESPKLQNIDYSLIEYSKEKNLSVLKNTTIPAISYVSMDTETFTKTSGEPSDSDNDYRLKLKRLLDT

     
     10
     WWWWWWWWWWWWWWWW
     ++ +++++++++++++
76   STETFTSTEPSDSDNNYSSLKLLMDTQTVTESIEPTDSDK


561
  LENGTH = 115  COMBINED P-VALUE = 1.23e-20  E-VALUE =    2e-19
  DIAGRAM: [2]-1-[3]-2-[1]-6-[1]-24

     [2]                           [3]          [1]                        [1]
     1.1e-13                       6.1e-07      1.5e-10                    6.3e-
     WWWWWWWWWWWWWWWWWWWWWWWWWWWWW WWWWWWWWWWW  WWWWWWWWWWWWWWWWWWWWW      WWWWW
     +++++++++++++++++++++++++++++ ++++ ++++++  + +++++++++ +++++++++      +++++
1    MRPLILEFTEKPTLKNLDFSLIEYSHKQNLSVIKDTEMPAIKFVSMDTETFTKTTGEPTDSDNDYKLSLRRVLDT

     
     10
     WWWWWWWWWWWWWWWW
     ++ +++++++++++++
76   STDTFTSTEPSDSDNDLKRLKLLMDTQTITESVEGTDSDK


556
  LENGTH = 114  COMBINED P-VALUE = 1.51e-20  E-VALUE =  2.4e-19

     [2]                           [3]          [1]                     [1]
     5.7e-13                       7.6e-08      1.2e-08                 4.0e-09
     WWWWWWWWWWWWWWWWWWWWWWWWWWWWW WWWWWWWWWWW  WWWWWWWWWWWWWWWWWWWWW   WWWWWWWW
     +++++++++++++++ +++++++++++++ +++++++++++  + ++++++++++++ ++  +    ++++++
1    MKPFIFQFKEQPTVESADYSQLQYDKILNLSIDKQTGMPAICALDLSTETFTKTQGEDSDTEQTYVSRLMGTESI

                       [1]
                       2.8e-10
     WWWWWWWWWWWWW     WWWWWWWWWWWWWWWWWWWWW
     +++  ++++ +++     +++++++ +++++++++++++
76   TLVDLEASDADPDRFSMSMLMGTETETRQYVEGADSDPQ


558
  LENGTH = 114  COMBINED P-VALUE = 1.65e-20  E-VALUE =  2.6e-19

     [2]                           [3]          [1]                     [1]
     5.7e-13                       3.4e-07      7.2e-10                 6.9e-11
     WWWWWWWWWWWWWWWWWWWWWWWWWWWWW WWWWWWWWWWW  WWWWWWWWWWWWWWWWWWWWW   WWWWWWWW
     +++++++++++++  +++++++ ++++++ +++ +++++++  + +++++++++++++++++++   ++++++++
1    MKPFILQFKESPLDTNVDYSGISYDKNLNLSIDIQTGLPAISALDLSTETLTKTNNESTDSDHNYITRLMGTETV

                       [1]
                       1.5e-09
     WWWWWWWWWWWWW     WWWWWWWWWWWWWWWWWWWWW
     +++++++++++++     +++++++++++ +++++++ +
76   TLVNNEASDSDRDRLNFIMLMGTNTQTRTITEQTDSDFH


545
  LENGTH = 142  COMBINED P-VALUE = 2.45e-20  E-VALUE =  3.9e-19
  DIAGRAM: [2]-1-[3]-2-[1]-6-[1]-6-[1]-24

     [2]                           [3]          [1]                        [1]
     5.0e-13                       5.0e-07      3.7e-11                    1.2e-
     WWWWWWWWWWWWWWWWWWWWWWWWWWWWW WWWWWWWWWWW  WWWWWWWWWWWWWWWWWWWWW      WWWWW
     ++++++++++ ++++++++++++++++++ +++++++++++  +++++++++++ +++++++++      +++++
1    MRPLILEFTETPELKNIDYSIIEYSMDQNLSVLKKTDIPAISYVNMDTATFTKTTGEPSDSDNDRSFKLKRLLDT

                           [1]
     08                    1.1e-09
     WWWWWWWWWWWWWWWW      WWWWWWWWWWWWWWWWWWWWW
     ++ +++ +  ++++++      +++++++ ++ ++++++++++
76   STDTKTIVDETDSDNDFKLKMRRLLDTSTDTFNSNEPSDSDSDRSSLKLLMDTQTITESTEPTDSDK


551
  LENGTH = 123  COMBINED P-VALUE = 7.01e-20  E-VALUE =  1.1e-18
  DIAGRAM: 11-[2]-1-[3]-2-[1]-3-[1]-24

                [2]                           [3]          [1]
                4.1e-13                       2.7e-07      4.2e-10
                WWWWWWWWWWWWWWWWWWWWWWWWWWWWW WWWWWWWWWWW  WWWWWWWWWWWWWWWWWWWWW
                ++++++++++++++ ++++++++++++++ +++++++++++  ++ ++++++++++++++++++
1    MTDKANRKIPIMNPLILQYTERANNDNFDFSQIEYSPKLNLTIDKKTGLPAIDFLNISTETHTRTYNESSDCDSE

        [1]
        1.4e-09
        WWWWWWWWWWWWWWWWWWWWW
        +++++ +++ +++++++ +++
76   NMGLMMGTVTHTSYQIEGSDNDASFNAVKSMMRTSSITLVSQEATDND


550
  LENGTH = 98  COMBINED P-VALUE = 1.24e-19  E-VALUE =    2e-18
  DIAGRAM: [2]-1-[3]-2-[1]-3-[1]-10

     [2]                           [3]          [1]                     [1]
     3.0e-13                       3.4e-07      1.9e-09                 5.5e-09
     WWWWWWWWWWWWWWWWWWWWWWWWWWWWW WWWWWWWWWWW  WWWWWWWWWWWWWWWWWWWWW   WWWWWWWW
     ++++++ ++++++++++++++++++++++ +++ +++++++   ++++ ++++++++ ++++++   ++++++++
1    MNPFILSFKESPRERDIDFSRIKYCEKLNLSIDIQTGLPAISSTNLSTTTLTKVYNETSDSDNDFNGLLMGTMTR

     
     
     WWWWWWWWWWWWW
     ++++ ++++ +++
76   TQYQLEGTDEDASFKNCQNINSI


552
  LENGTH = 123  COMBINED P-VALUE = 4.52e-19  E-VALUE =  7.2e-18
  DIAGRAM: 11-[2]-1-[3]-2-[1]-3-[1]-24

                [2]                           [3]          [1]
                1.3e-12                       2.8e-06      9.0e-11
                WWWWWWWWWWWWWWWWWWWWWWWWWWWWW WWWWWWWWWWW  WWWWWWWWWWWWWWWWWWWWW
                ++++++++++++++++++ ++++++++++ +++ +++++++  +++++++++++++++++++++
1    MTDKTISKNPVMNPLILQYTEKFKNENFDLSQIAYSSELNLTIYTKTGLPAIDLLNMSTETHTRTYNESSDCDSE

        [1]
        2.8e-09
        WWWWWWWWWWWWWWWWWWWWW
        +++++ +++ +++++++ +++
76   NMGLMMGTLTHTSYQIEGSDNDSSFNAFKSMIGTNTFTFISQESTDND


553
  LENGTH = 112  COMBINED P-VALUE = 5.62e-18  E-VALUE =    9e-17
  DIAGRAM: [2]-1-[3]-2-[1]-3-[1]-24

     [2]                           [3]          [1]                     [1]
     3.1e-12                       1.1e-06      3.1e-08                 1.8e-09
     WWWWWWWWWWWWWWWWWWWWWWWWWWWWW WWWWWWWWWWW  WWWWWWWWWWWWWWWWWWWWW   WWWWWWWW
     +++++++++++++++++++++++++++++ ++++ ++++++    ++++++++ + ++++++ +    +++++++
1    MKPLILEFIEAATEPDLDFSMIEYNYDLNLNVNKTTGLPAVQMPTLSTSTGTKIFDEVSDSDDSEALTMMATMTG

     
     
     WWWWWWWWWWWWW
     +++ ++++++++
76   TFTTTEGSDSDPRNFTHFTTMITMTTTRTMLESSDTD


559
  LENGTH = 114  COMBINED P-VALUE = 7.75e-18  E-VALUE =  1.2e-16

     [2]                           [3]          [1]                     [1]
     3.8e-11                       4.4e-07      4.8e-10                 1.9e-09
     WWWWWWWWWWWWWWWWWWWWWWWWWWWWW WWWWWWWWWWW  WWWWWWWWWWWWWWWWWWWWW   WWWWWWWW
     ++++++++++++++++++  ++++++++  ++ ++ +++++  + +++++++++ +++++++++   +++ ++++
1    MKPFIFQFLEKGEEEGFDLDLLQYDRKLSLSIEKASGLPAIKFLDLSTETFTKTENEVADSDNNYLNRLVETETL

                       [1]
                       7.1e-09
     WWWWWWWWWWWWW     WWWWWWWWWWWWWWWWWWWWW
     ++++++ ++++++     +++++ ++++ +++ ++ +++
76   TAVNNEDSDSDNNYKNLQHLMATTTATRKFTEESDTDYN


549
  LENGTH = 122  COMBINED P-VALUE = 1.21e-17  E-VALUE =  1.9e-16
  DIAGRAM: 3-[2]-1-[3]-2-[1]-4-[1]-8-[1]-1

        [2]                           [3]          [1]                      [1]
        3.2e-10                       1.4e-07      1.2e-09                  2.3e
        WWWWWWWWWWWWWWWWWWWWWWWWWWWWW WWWWWWWWWWW  WWWWWWWWWWWWWWWWWWWWW    WWWW
         ++++++++ +++ ++++++ +++++ ++ +++++++++++  + ++++++++++ ++++++ +    ++++
1    MKRIKPFILNFGTEVLSEGLDYSTIEYSYTKNLNVIKATGMPAIGMAGLDTETLTKTGFESSDSDKDFNVKQLLD

                              [1]
     -10                      1.5e-08
     WWWWWWWWWWWWWWWWW        WWWWWWWWWWWWWWWWWWWWW
     ++++++ ++++++++++         ++++++++  ++++++ +++
76   TSTGTRSFGEVSDSDQDRNTRVDILSLLDTATLTESGTEVTDTDQDL


554
  LENGTH = 144  COMBINED P-VALUE = 4.64e-16  E-VALUE =  7.4e-15
  DIAGRAM: [2]-2-[3]-2-[1]-8-[1]-7-[1]-22

     [2]                            [3]          [1]                          [1
     2.1e-09                        5.0e-07      6.3e-08                      9.
     WWWWWWWWWWWWWWWWWWWWWWWWWWWWW  WWWWWWWWWWW  WWWWWWWWWWWWWWWWWWWWW        WW
     +++++++++++ ++++++ + +++++++   +++++++++++  ++++++++ +  + +++ +++        +
1    MKPFIYNFLHHERHQAVDTNSIIEYSERLNLSVVKGTDYPAINIANLGTQTMNKGEGTGSDVDRNDHISKSYLQS

     ]                         [1]
     1e-09                     2.5e-10
     WWWWWWWWWWWWWWWWWWW       WWWWWWWWWWWWWWWWWWWWW
     ++++++++   + ++++++       ++++++++++ ++++++++++
76   LGTNTFTRADRETTDSDYNSTVNAIAALMGTNTLTLDGGEPSDSDHQRLFEMMSTRTLTESKETTDSDS


547
  LENGTH = 110  COMBINED P-VALUE = 1.31e-12  E-VALUE =  2.1e-11
  DIAGRAM: [2]-13-[1]-3-[1]-23

     [2]                                       [1]                     [1]
     2.1e-09                                   1.6e-10                 1.7e-10
     WWWWWWWWWWWWWWWWWWWWWWWWWWWWW             WWWWWWWWWWWWWWWWWWWWW   WWWWWWWWW
     ++ +++++++++++ ++  + ++++ +++             ++++++++++++ ++++++++   +++++++++
1    MRNLVLNYFEEINNTIIENGDLKYCDKLNLTVDKNNEPAISRVNLATQTFTKTYDEASDSDSDRNAVLMSTQTRT

     
     
     WWWWWWWWWWWW
     ++++++++++++
76   FTNTESSDSDRDNRINLLMITSTITESQELTDSDK


546
  LENGTH = 111  COMBINED P-VALUE = 5.73e-07  E-VALUE =  9.2e-06
  DIAGRAM: 43-[1]-2-[1]-24

                                                [1]                    [1]
                                                1.3e-09                1.6e-09
                                                WWWWWWWWWWWWWWWWWWWWW  WWWWWWWWW
                                                 ++ +++++++++++ +++++  ++ ++++++
1    MRYLLFEYGESPTYMADIPPVKYDYEKNLNVLESNNTPAISVLDNCVTETGTKVHNESGDSDNNFPLNFGTQTFT

     
     
     WWWWWWWWWWWW
     ++ +++++++ +
76   LVDTEQSDSDEDSVLLSSSLITMTTTRVEMESTDSD


560
  LENGTH = 115  COMBINED P-VALUE = 3.71e-05  E-VALUE =  0.00059
  DIAGRAM: 46-[1]-4-[1]-23

                                                   [1]                      [1]
                                                   1.0e-07                  1.2e
                                                   WWWWWWWWWWWWWWWWWWWWW    WWWW
                                                    + ++ ++++ ++++ + +++     +++
1    MPFILRYKEILNDKDDILYNKKTQYSKELNLTIDIETRNPLIFSDLSLASTITMTKSGAEGPDKDNERRINNLMA

     
     -08
     WWWWWWWWWWWWWWWWW
     +++++ +  ++++++++
76   TATRTDTLKEVTDSDPSRLALGFATGTYTETKKEVTDQDR


548
  LENGTH = 118  COMBINED P-VALUE = 3.94e-05  E-VALUE =  0.00063
  DIAGRAM: 31-[3]-2-[1]-53

                                    [3]          [1]
                                    1.5e-05      3.0e-05
                                    WWWWWWWWWWW  WWWWWWWWWWWWWWWWWWWWW
                                    +++++++ ++   + +  +++++ +  +++  ++
1    MNQPFILRYIDYFKPEESIKEYTEYSSALSLNVLKGTETPATCVLSLEGETFTKAHQDVTDLCSNAKAGFVKFLE

********************************************************************************


CPU: ip-172-31-15-215
Time 0.028 secs.

mast -oc . -nostatus meme.xml sequences.fa
