Metadata-Version: 2.1
Name: RGI
Version: 6.0.0
Summary: Resistance Gene Identifier
Home-page: https://card.mcmaster.ca
Download-URL: https://card.mcmaster.ca/download
Author: Alcock et al. 2020 CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. Nucleic Acid Research, 48, D517-525
Author-email: card@mcmaster.ca
License: The license is located at https://card.mcmaster.ca/about
Platform: Linux
Platform: Mac OS X
License-File: LICENSE
Requires-Dist: biopython (==1.78)
Requires-Dist: filetype (>=1.0.0)
Requires-Dist: pytest (>=3.0.0)
Requires-Dist: pandas (>=0.15.0)
Requires-Dist: matplotlib (>=2.1.2)
Requires-Dist: seaborn (>=0.8.1)
Requires-Dist: pyfaidx (>=0.5.4.1)
Requires-Dist: pyahocorasick (==1.4.0)
Requires-Dist: pysam (>=0.16.0.1)
Requires-Dist: beautifulsoup4 (>=4.9.3)
Requires-Dist: requests (==2.24.0)
Requires-Dist: lxml (>=4.9.1)
Requires-Dist: dask[dataframe]

This tool provides a preliminary annotation of your DNA sequence(s) based upon the data available in CARD. Hits to genes tagged with Antibiotic Resistance ontology terms will be highlighted. As CARD expands to include more pathogens, genomes, plasmids, and ontology terms this tool will grow increasingly powerful in providing first-pass detection of antibiotic resistance associated genes.
