reviseAnnotations-package	reviseAnnotations
basesDifferent	basesDifferent
calculateBasepairDifference	calculateBasepairDifference
constructAlternativeEvents	constructAlternativeEvents
constructAlternativeEventsWrapper	constructAlternativeEventsWrapper
constructEventMetadata	constructEventMetadata
dataFrameToGRanges	dataFrameToGRanges
extendSingleTranscript	extendSingleTranscript
extendTranscriptsPerGene	extendTranscriptsPerGene
extractGeneData	extractGeneData
fillMissingInternalExons	fillMissingInternalExons
filterTranscriptMetadata	filterTranscriptMetadata
flattenAlternativeEvents	flattenAlternativeEvents
identifyTranscriptGroups	identifyTranscriptGroups
importTranscriptMetadataFromGTF	importTranscriptMetadataFromGTF
indentifyAddedRemovedRegions	indentifyAddedRemovedRegions
listIntersect	listIntersect
listUnion	listUnion
makeGeneTranscriptFromExons	makeGeneTranscriptFromExons
markLongestGencodeTranscript	markLongestGencodeTranscript
mergeByMaxDifference	mergeByMaxDifference
replaceExtendedTranscripts	replaceExtendedTranscripts
reviseAnnotations	reviseAnnotations
splitIntoBatches	splitIntoBatches
transcriptsToAnnotations	transcriptsToAnnotations
