# Generated by roxygen2: do not edit by hand

export(ExploratorySummarizedExperiment)
export(ExploratorySummarizedExperimentList)
export(annotatedHeatmap)
export(anova_pca_metadata)
export(barcode_plot)
export(bootstrapMedian)
export(calculateDendrogram)
export(calculateDist)
export(checkListIsSubset)
export(chooseGroupingVariables)
export(clusteringDendrogram)
export(colGeomMeans)
export(colMedians)
export(compilePCAData)
export(cond_log2_transform_assays)
export(cond_log2_transform_matrix)
export(convertIds)
export(eselistFromYAML)
export(eselistfromConfig)
export(foldChange)
export(geom_mean)
export(getExtension)
export(getSeparator)
export(ggplot_boxplot)
export(ggplot_densityplot)
export(ggplotify)
export(hiddenInput)
export(idToLabel)
export(inlineField)
export(interactiveHeatmap)
export(interleaveColumns)
export(is_valid_positive_integer_vector)
export(madScore)
export(makeAnnotationColors)
export(makeColorScale)
export(na.replace)
export(nlines)
export(plotly_boxplot)
export(plotly_densityplot)
export(plotly_quartiles)
export(plotly_scatterplot)
export(prepareApp)
export(prettifyGeneSetName)
export(prettifyVariablename)
export(pushToList)
export(read_contrasts)
export(read_differential)
export(read_matrix)
export(read_metadata)
export(selectVariableGenes)
export(simpleSplit)
export(singleValidMatrix)
export(splitStringToFixedwidthLines)
export(static_scatterplot)
export(stringsToNamedVector)
export(summarizeMatrix)
export(summarySE)
export(ucfirst)
export(unpack.list)
export(validate_indices)
export(validate_inputs)
exportClasses(ExploratorySummarizedExperiment)
exportClasses(ExploratorySummarizedExperimentList)
exportMethods("[")
import(SummarizedExperiment, except = 'shift')
import(data.table)
import(ggdendro)
import(ggplot2, except = 'last_plot')
import(plotly)
import(plyr, except = c('mutate', 'arrange', 'rename',
'summarise'))

import(scatterplot3d)
import(shiny)
import(yaml)
importFrom(dplyr,group_map)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,png)
importFrom(graphics,par)
