Package: shaman
Type: Package
Title: shaman - Sampling HiC contAct Matrices for Aparametric
        Normalization
Version: 2.0
Date: 201-08-27
Authors@R: c(person("Amos", "Tanay", role=c("aut")),
    person("Netta", "Mendelson Cohen", email="netta.mendelsoncohen@weizmann.ac.il",
    role=c("aut", "cre")))
Description: Generate expected HiC data maintaining marginal coverage,
  and the decay in contact probability with increasing genomic distance. Expected
  HiC data is used for normalization and graphical presenstation of statistical
  significance of observed HiC contact enrichments.
License: GPL
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
LinkingTo: Rcpp
SystemRequirements: C++11
Suggests: knitr, rmarkdown
VignetteBuilder: rmarkdown, knitr
Imports: misha (>= 3.5.6), Rcpp (>= 0.12.11), RANN, data.table, ggplot2
        (>= 2.2.0), reshape2, grid, Gviz, plyr, parallel (>= 3.3.2) ,
        doMC (>= 1.3.4)
Remotes: bioc::3.3/Gviz, bioc::3.3/GenomeInfoDb,
URL: http://tanaylab.bitbucket.io/shaman,
        https://bitbucket.com/tanaylab/shaman
BugReports: https://bitbucket.com/tanaylab/shaman/issues
Author: Amos Tanay [aut],
  Netta Mendelson Cohen [aut, cre]
Maintainer: Netta Mendelson Cohen <netta.mendelsoncohen@weizmann.ac.il>
Built: R 4.4.2; x86_64-conda-linux-gnu; 2024-12-26 00:54:30 UTC; unix
