# Bioinformatics tools to compute statistical enrichment of geonomic regions for ReMap peaks

## Documentation for package ‘ReMapEnrich’ version 0.99.0

- DESCRIPTION file.

## Help Pages

ReMapEnrich-package | ReMapEnrich
bedImport | Import bed files
bedToGranges | Bed to GRanges
computeEnrichment | Computes enrichment
countMappedPeaks | Count mapped peaks
downloadEncodePeaks | Download ENCODE peaks
downloadRemapCatalog | Download Remap catalogue
downloadUcscChromSizes | Download ucsc chromosomes sizes
enrichment | Enrichment
enrichmentBarPlot | Enrichment bar plot
enrichmentDotPlot | Enrichment dot plot
enrichmentVolcanoPlot | Enrichment volcano plot
exportEnrichment | Export enrichment
extractEnrichment | Extract enrichment
fitPoisson | Adjust to poisson
genRegions | Generate regions
grangesToBed | Granges to bed
importChromSizes | Import chromosomes sizes
intersect | Intersect
loadChromFile | Load chromosomes sizes file
loadChromSizes | Load chromosomes sizes
lolaDBToCatalog | Lola DB to catalogue
randomIntersections | Random intersections
ReMapEnrich | ReMapEnrich
shuffle | Shuffle
textOutline | Text outline