# Tabulate, analyse and visualise admixture proportions from STRUCTURE, TESS, BAPS, ADMIXTURE and tab-delimited q-matrices files

## Documentation for package ‘pophelper’ version 2.3.0

- DESCRIPTION file.

## Help Pages

alignK | Align clusters
analyseQ | Analyse STRUCTURE, TESS, BAPS or BASIC text runs. Wrapper around several smaller functions.
analyzeQ | Analyse STRUCTURE, TESS, BAPS or BASIC text runs. Wrapper around several smaller functions.
as.qlist | Convert a qlist or qlist-like list to a valid qlist.
clumppExport | Generate CLUMPP output from a qlist
collectClumppOutput | Collect CLUMPP output files from multiple folders
collectRunsTess | Collect TESS cluster run files from multiple folders
distructColors | Vector of 90 Distruct colours
distructColours | Vector of 90 Distruct colours
distructExport | Generate files for DISTRUCT.
evannoMethodStructure | Perform the Evanno method for STRUCTURE runs.
is.qlist | Verify if a qlist is formatted correctly.
joinQ | Combine two or more qlist objects into one
mergeQ | Merge replicate runs of the same K
plotQ | Generate barplots from qlists.
plotQMultiline | Plot a qlist as individual-level multiline barplot
readQ | Convert run files (q-matrices) to qlist.
readQBaps | Convert BAPS cluster files to qlist.
readQBasic | Convert delimited text files to qlist.
readQClumpp | Convert CLUMPP format numeric text files to qlist.
readQStructure | Convert STRUCTURE run files to qlist.
readQTess | Convert TESS cluster files to qlist.
readQTess3 | Convert TESS3 R object to pophelper qlist.
sortQ | Sort runs in a qlist based on an attribute
splitQ | Split a qlist into sublists by attribute
summariseQ | Summarise a tabulated dataframe
summarizeQ | Summarise a tabulated dataframe
tabulateQ | Tabulate runs from a qlist
verifyGrplab | Verify a grplab dataframe