pathfindR-package	pathfindR
active_snw_enrichment_wrapper	active_snw_enrichment_wrapper
active_snw_search	active_snw_search
annotate_term_genes	annotate_term_genes
check_java_version	check_java_version
cluster_enriched_terms	cluster_enriched_terms
cluster_graph_vis	cluster_graph_vis
color_kegg_pathway	color_kegg_pathway
combined_results_graph	combined_results_graph
combine_pathfindR_results	combine_pathfindR_results
configure_output_dir	configure_output_dir
create_HTML_report	create_HTML_report
create_kappa_matrix	create_kappa_matrix
enrichment	enrichment
enrichment_analyses	enrichment_analyses
enrichment_chart	enrichment_chart
fetch_gene_set	fetch_gene_set
fetch_java_version	fetch_java_version
filterActiveSnws	filterActiveSnws
fuzzy_term_clustering	fuzzy_term_clustering
get_biogrid_pin	get_biogrid_pin
get_gene_sets_list	get_gene_sets_list
get_kegg_gsets	get_kegg_gsets
get_mgsigdb_gsets	get_mgsigdb_gsets
get_pin_file	get_pin_file
get_reactome_gsets	get_reactome_gsets
gset_list_from_gmt	gset_list_from_gmt
hierarchical_term_clustering	hierarchical_term_clustering
hyperg_test	hyperg_test
input_processing	input_processing
input_testing	input_testing
isColor	isColor
pathfindR	pathfindR
plot_scores	plot_scores
process_pin	process_pin
return_pin_path	return_pin_path
run_pathfindR	run_pathfindR
score_terms	score_terms
single_iter_wrapper	single_iter_wrapper
summarize_enrichment_results	summarize_enrichment_results
term_gene_graph	term_gene_graph
term_gene_heatmap	term_gene_heatmap
UpSet_plot	UpSet_plot
visualize_active_subnetworks	visualize_active_subnetworks
visualize_KEGG_diagram	visualize_KEGG_diagram
visualize_terms	visualize_terms
visualize_term_interactions	visualize_term_interactions
