Package: NetCoMi
Type: Package
Title: Network Construction and Comparison for Microbiome Data
Version: 1.1.0
Author: Stefanie Peschel [aut, cre]
Maintainer: Stefanie Peschel <stefpeschel@gmail.com>
Description: NetCoMi offers functions for constructing, analyzing, and comparing 
    microbial association networks as well as dissimilarity-based networks for 
    microbial compositional data. It also includes functionality for 
    constructing differential association networks.
License: GPL-3 + file LICENSE
Depends: SpiecEasi (>= 1.0.6)
Imports: Biobase, corrplot, doSNOW, fdrtool, filematrix, foreach,
        graphics, grDevices, gtools, huge, igraph, MASS, Matrix,
        mixedCCA (>= 1.6.2), orca, phyloseq, pulsar, qgraph,
        RColorBrewer, Rdpack, rlang, SPRING, stats, utils, vegan, WGCNA
Remotes: bioc::Biobase, bioc::phyloseq, github::zdk123/SpiecEasi,
        github::GraceYoon/SPRING
Suggests: BiocManager, cccd, ccrepe, DESeq2, discordant, LaplacesDemon,
        limma, metagenomeSeq, metagMisc, propr, testthat, zCompositions
RdMacros: Rdpack
Encoding: UTF-8
RoxygenNote: 7.2.2
Built: R 4.2.2; ; 2023-03-06 04:39:24 UTC; unix
