# Network Construction and Comparison for Microbiome Data

## Documentation for package ‘NetCoMi’ version 1.0.3

- DESCRIPTION file.

## Help Pages

NetCoMi-package | NetCoMi: Network Comparison for Microbial Compositional Data
boottest | Bootstrap Procedure for Testing Statistical Significance of Correlation Values
calc_association | Compute associations between taxa
calc_props | Calculate network properties
cclasso | CCLasso: Correlation inference of Composition data through Lasso method
colToTransp | Adding transparency to a color
createAssoPerm | Create and store association matrices for permuted data
diffnet | Constructing Differential Networks for Microbiome Data
gcoda | gCoda: conditional dependence network inference for compositional data
get_vec_names | Function for Generating Vector Names
installNetCoMiPacks | Install all packages used within NetCoMi
multAdjust | Multiple testing adjustment
netAnalyze | Microbiome Network Analysis
netCompare | Group Comparison of Network Properties
netConstruct | Constructing Networks for Microbiome Data
permtest_diff_asso | Permutation Tests for Determining Differential Associations
plot | Plot Method for microNetProps Objects
plot.diffnet | Plot method for objects of class diffnet
plot.microNetProps | Plot Method for microNetProps Objects
print.summary.microNetComp | Summary Method for Objects of Class netProps
print.summary.microNetProps | Summary Method for Objects of Class microNetProps
springLayout | Generate a Spring Embedded Layout
summary.microNetComp | Summary Method for Objects of Class netProps
summary.microNetProps | Summary Method for Objects of Class microNetProps