Package: NetCoMi
Type: Package
Title: Network Construction and Comparison for Microbiome Data
Version: 1.0.3
Author: Stefanie Peschel [aut, cre]
Maintainer: Stefanie Peschel <stefanie.peschel@mail.de>
Description: NetCoMi offers functions for constructing, analyzing, and comparing 
    microbial association networks as well as dissimilarity-based networks for 
    microbial compositional data. It also includes functionality for 
    constructing differential association networks.
License: GPL-3 + file LICENSE
Depends: SpiecEasi (>= 1.0.6)
Imports: Biobase, doSNOW, fdrtool, filematrix, foreach, graphics,
        grDevices, gtools, huge, igraph, MASS, Matrix, phyloseq,
        pulsar, qgraph, Rdpack, snow, SPRING, stats, utils, vegan,
        WGCNA
Remotes: bioc::Biobase, bioc::phyloseq, github::zdk123/SpiecEasi,
        github::GraceYoon/SPRING
Suggests: BiocManager, cccd, ccrepe, DESeq2, discordant, LaplacesDemon,
        limma, metagenomeSeq, propr, testthat, zCompositions
RdMacros: Rdpack
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.0
Built: R 4.1.3; ; 2022-08-02 06:46:01 UTC; unix
